Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (146 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)                 31   0.38 
SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)          29   1.5  
SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25)                 28   2.7  
SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)                  28   2.7  
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.5  
SB_17482| Best HMM Match : XylR_N (HMM E-Value=7.6)                    27   4.7  
SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)                27   4.7  
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)                   27   6.2  

>SB_17765| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-16)
          Length = 424

 Score = 31.1 bits (67), Expect = 0.38
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 32  IGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFI 70
           +G++  V G     CG  W++  A TL YN   + + F+
Sbjct: 159 VGWSKFVPGAAKVSCGPDWETQNASTLSYNIVLLIVGFV 197


>SB_46239| Best HMM Match : Phage_integrase (HMM E-Value=0.24)
          Length = 364

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 5/71 (7%)

Query: 24 IESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKEQL 83
          +E+R W  I Y  LV G  S +  R W+S    TL    FA   SF+  F      K  L
Sbjct: 28 LETRCWRFISYRPLVSGSLSTF-ARNWESSNPLTLTLCLFA---SFLADFVQPSSIKVYL 83

Query: 84 EACRKL-IKRG 93
             R + I++G
Sbjct: 84 SGVRAMYIEQG 94


>SB_32630| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-25)
          Length = 474

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/39 (30%), Positives = 18/39 (46%)

Query: 32  IGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFI 70
           +G++  V G     C   W S  A TL YN   + + F+
Sbjct: 145 VGWSKFVPGAAGFSCAPDWGSASASTLSYNIVLMVLGFV 183


>SB_57042| Best HMM Match : WD40 (HMM E-Value=4.9e-09)
          Length = 707

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 7   IFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVG-GDGSAY 45
           I + +CV+ V  I TF +E+ KW  +    +VG  DGS Y
Sbjct: 492 IRERKCVM-VAAIHTFPVETIKWRALDDFLVVGCSDGSVY 530


>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5834

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)

Query: 41  DGSAYCGRGWDSVGAH 56
           DG  YC  GW  VG H
Sbjct: 96  DGKCYCDPGWKGVGCH 111


>SB_17482| Best HMM Match : XylR_N (HMM E-Value=7.6)
          Length = 150

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 38 VGGDGSAYCGRGWDSVGAHTLGYNNFAIGISF 69
          + G  SA C R W S G   + YN F + ++F
Sbjct: 53 IPGKSSANCEREWTSRGLGNITYNVFLLVMAF 84


>SB_30844| Best HMM Match : zf-C2H2 (HMM E-Value=0.0028)
          Length = 401

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 16/65 (24%), Positives = 32/65 (49%), Gaps = 1/65 (1%)

Query: 67  ISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIV 126
           +S++G    N     +L   R  I++ +++ K  +  KL  +R L   +S    +FEI+ 
Sbjct: 271 LSYVGAAMVNQGKSPEL-GFRLTIRKIINVEKPRRSSKLERNRCLKHEVSQSSLVFEILQ 329

Query: 127 EWPHF 131
            W ++
Sbjct: 330 SWKYY 334


>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
          Length = 211

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 11/39 (28%), Positives = 17/39 (43%)

Query: 32  IGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFI 70
           +G++  V G     C   W S    TL YN   + + F+
Sbjct: 75  VGWSKFVPGAAGFSCAPDWGSASESTLSYNIVLMDLGFV 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.144    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,283,994
Number of Sequences: 59808
Number of extensions: 214110
Number of successful extensions: 515
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 8
length of query: 146
length of database: 16,821,457
effective HSP length: 76
effective length of query: 70
effective length of database: 12,276,049
effective search space: 859323430
effective search space used: 859323430
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)