Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (146 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   3.0  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   5.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   6.9  

>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase
          protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 24 IESRKWHDIGYNFLVGGDGSA 44
          + S +  D+ Y+F+V G G+A
Sbjct: 59 VHSSRIPDLSYDFIVVGGGAA 79


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 99  IAKDYKLFGHRQLSSTLSPG 118
           + K ++ F H+QL S+ +PG
Sbjct: 6   LPKYHQQFHHQQLFSSANPG 25


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 2   YLFYFIFQSQCVLRVRLI 19
           YL Y I  SQC + + L+
Sbjct: 665 YLMYAIAGSQCFINIWLL 682


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.144    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,251
Number of Sequences: 429
Number of extensions: 1843
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 146
length of database: 140,377
effective HSP length: 52
effective length of query: 94
effective length of database: 118,069
effective search space: 11098486
effective search space used: 11098486
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 40 (20.2 bits)