Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(146 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g28380.1 68418.m03446 pentatricopeptide (PPR) repeat-containi... 32 0.18
At5g28340.1 68418.m03441 pentatricopeptide (PPR) repeat-containi... 32 0.18
At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph... 28 2.9
At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl 4-diph... 28 2.9
At4g25240.1 68417.m03632 multi-copper oxidase type I family prot... 28 2.9
At3g13070.1 68416.m01634 CBS domain-containing protein / transpo... 28 2.9
At1g54960.1 68414.m06277 NPK1-related protein kinase, putative (... 28 2.9
At3g60960.1 68416.m06821 pentatricopeptide (PPR) repeat-containi... 27 5.1
At2g46090.1 68415.m05733 diacylglycerol kinase family protein co... 27 5.1
At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing ... 27 5.1
At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) simil... 27 6.7
At3g51930.1 68416.m05696 transducin family protein / WD-40 repea... 26 8.8
At1g55930.1 68414.m06415 CBS domain-containing protein / transpo... 26 8.8
>At5g28380.1 68418.m03446 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 390
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 67 ISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIV 126
IS F N + +C +IK D G + +L+ H L +L+PG + + I+
Sbjct: 92 ISLFDYFFNESQTLPNMLSCNLIIKAHCDQGSVDHALELYRHILLDGSLAPGIETYRILT 151
Query: 127 E 127
+
Sbjct: 152 K 152
>At5g28340.1 68418.m03441 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 435
Score = 31.9 bits (69), Expect = 0.18
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 67 ISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIV 126
IS F N + +C +IK D G + +L+ H L +L+PG + + I+
Sbjct: 137 ISLFDYFFNESQTLPNMLSCNLIIKAHCDQGSVDHALELYRHILLDGSLAPGIETYRILT 196
Query: 127 E 127
+
Sbjct: 197 K 197
>At5g60600.2 68418.m07603 1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase, putative / GcpE family protein
similar to GcpE [Plasmodium falciparum] GI:13094969;
contains Pfam profile PF04551: GcpE protein; supporting
cDNA gi|27462471|gb|AF434673.1
Length = 740
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 6 FIFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAI 65
F+F + V ++Q + + + + G+++ + G G G D +G
Sbjct: 276 FVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHL-GVTEAGEGEDGRMKSAIGIGTLLQ 334
Query: 66 -GISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKI 99
G+ + +PP+E+++ CR+L G K+
Sbjct: 335 DGLGDTIRVSLTEPPEEEIDPCRRLANLGTKAAKL 369
>At5g60600.1 68418.m07602 1-hydroxy-2-methyl-2-(E)-butenyl
4-diphosphate synthase, putative / GcpE family protein
similar to GcpE [Plasmodium falciparum] GI:13094969;
contains Pfam profile PF04551: GcpE protein; supporting
cDNA gi|27462471|gb|AF434673.1
Length = 741
Score = 27.9 bits (59), Expect = 2.9
Identities = 19/95 (20%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 6 FIFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAI 65
F+F + V ++Q + + + + G+++ + G G G D +G
Sbjct: 276 FVFSMKASNPVIMVQAYRLLVAEMYVHGWDYPLHL-GVTEAGEGEDGRMKSAIGIGTLLQ 334
Query: 66 -GISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKI 99
G+ + +PP+E+++ CR+L G K+
Sbjct: 335 DGLGDTIRVSLTEPPEEEIDPCRRLANLGTKAAKL 369
>At4g25240.1 68417.m03632 multi-copper oxidase type I family protein
pollen-specific protein precursor -Nicotiana tabacum,
PID:g19902; contains Pfam profile: PF00394 Multicopper
oxidase
Length = 589
Score = 27.9 bits (59), Expect = 2.9
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 19 IQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTL-----GYNNFAIGISFIGTF 73
IQ+FH++ + +G +F + + WD++ T+ G+ I + +G +
Sbjct: 451 IQSFHVDGYSFFVVGMDFGIWSEDKKGSYNNWDAISRSTIEVYPGGWTAVLISLDNVGVW 510
Query: 74 N 74
N
Sbjct: 511 N 511
>At3g13070.1 68416.m01634 CBS domain-containing protein /
transporter associated domain-containing protein similar
to SP|Q54318 Hemolysin C [Serpulina hyodysenteriae]
{Treponema hyodysenteriae}; contains Pfam profiles
PF00571: CBS domain, PF03471: Transporter associated
domain, PF01595: Domain of unknown function
Length = 661
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 71 GTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEI 124
G+ +D +++LE+ + L+KRG+ +G + L+G +++ ++ + +E+
Sbjct: 83 GSQRKSDSGEKELESIKVLLKRGIVIGALVCGVFLYGCQKVLASAGVVEAGYEV 136
>At1g54960.1 68414.m06277 NPK1-related protein kinase, putative
(ANP2) similar to protein kinase [Nicotiana tabacum]
gi|456309|dbj|BAA05648; identical to cDNA NPK1-related
protein kinase 2, partial cds GI:2342424
Length = 596
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 81 EQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPG 118
++LE R+ I R +G +D L HR+ S SPG
Sbjct: 558 QELERKRREITRQAGMGSSPRDRSLSRHREKSRFASPG 595
>At3g60960.1 68416.m06821 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 403
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/61 (24%), Positives = 26/61 (42%)
Query: 67 ISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIV 126
IS F N +C +IK D G + +L+ H L ++PG + + I+
Sbjct: 108 ISLFNYFFNESQTLPNTLSCDLIIKAHCDQGHVDDALELYRHILLDGRVAPGIETYMILA 167
Query: 127 E 127
+
Sbjct: 168 K 168
>At2g46090.1 68415.m05733 diacylglycerol kinase family protein
contains INTERPRO domain, IPR001206, DAG-kinase
catalytic domain
Length = 364
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 58 LGYNNFAIGISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYK 104
LG G F TF N+ P E +E + ++ +D+G I K+ K
Sbjct: 150 LGLIPLGTGSDFARTFGWNNDPCEAVERIARGMRSRIDVGVIDKEGK 196
>At1g17640.1 68414.m02183 RNA recognition motif (RRM)-containing
protein similar to GB:L02953 from [Xenopus laevis]
(Nucleic Acids Res. 21, 999-1006 (1993)); contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 369
Score = 27.1 bits (57), Expect = 5.1
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 94 VDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIVEWPHFASDFTN 137
VD G I + + HR SS++S KLF V W A F N
Sbjct: 42 VDTGGIQMKHSV-DHRHSSSSMSSPGKLFVGGVSWETTAETFAN 84
>At5g17850.1 68418.m02092 cation exchanger, putative (CAX8) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 559
Score = 26.6 bits (56), Expect = 6.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 21 TFHIESRKWHDIGYNFLVGGDGSAYC 46
+F ES+ +D+G N +VGG G C
Sbjct: 152 SFMGESKGTYDVGLNTVVGGSGFVTC 177
>At3g51930.1 68416.m05696 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
myosin heavy chain kinase B (SP:P90648)(GI:1903458)
[Dictyostelium discoideum]
Length = 415
Score = 26.2 bits (55), Expect = 8.8
Identities = 12/22 (54%), Positives = 13/22 (59%)
Query: 24 IESRKWHDIGYNFLVGGDGSAY 45
+ES K HD N LV GDG Y
Sbjct: 207 LESIKAHDDAINGLVAGDGRVY 228
>At1g55930.1 68414.m06415 CBS domain-containing protein /
transporter associated domain-containing protein
contains Pfam profiles PF00571: CBS domain, PF03471:
Transporter associated domain, PF01595: Domain of
unknown function
Length = 653
Score = 26.2 bits (55), Expect = 8.8
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 70 IGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLF 122
+G + E++++ R L+KRG+ LG + +G ++ ++ S D F
Sbjct: 80 VGISQKHSDSTEKVDSIRILLKRGIVLGAVVCGVLFYGCGKVLASTSVVDVAF 132
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.325 0.144 0.463
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,840,443
Number of Sequences: 28952
Number of extensions: 163728
Number of successful extensions: 532
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 13
length of query: 146
length of database: 12,070,560
effective HSP length: 75
effective length of query: 71
effective length of database: 9,899,160
effective search space: 702840360
effective search space used: 702840360
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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