GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (146 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    30   0.16 
SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomy...    28   0.66 
SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|...    27   0.87 
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   2.0  
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   2.0  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   4.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   6.1  
SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   6.1  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   6.1  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    24   8.1  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    24   8.1  

>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.16
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 6   FIFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVGGDGSAY 45
           FI+ S C+  ++  + + I++RK  D+ Y  + G  GS Y
Sbjct: 430 FIWGSICLAHIQFRRAWKIQNRKLEDLPYRSIFGVYGSIY 469


>SPBC15C4.04c |||amino acid permease, unknown 10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 0.66
 Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 26  SRKWHDIGYNFLVGGDGSAYCGRGWDSVGAH 56
           S  WH IG++FL G    A+C   +D+  AH
Sbjct: 253 SSGWHPIGFSFLFGFLSVAWCMTDYDAT-AH 282


>SPBPB2B2.02 |mug180||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 381

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 97  GKIAKDYKLFGHRQLSSTLSPGDKLFEIIVEWPHFASDFTNLTD 140
           G   KD ++F H  + STL    K      E P++   FT+  D
Sbjct: 55  GLTVKDVRIFFHDSIGSTLLKNRKKLNSENELPNYGEKFTHKYD 98


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 6   FIFQSQCVLRVRLIQTFHIESRKW 29
           FI Q++ + + R ++ FH++  KW
Sbjct: 80  FIDQAERLCQTRALEAFHLDGEKW 103


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 43 SAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKEQ 82
          S   G   +S+G HTL  N F    S I   ++   P+EQ
Sbjct: 28 SQLSGTNEESLGGHTLSSNAFKNNSSSISPSSSAKDPREQ 67


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 62  NFAIGISFI-GTFNN-NDPPKEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLS 116
           N+  G S + GT N   D   E++E CR L+K+  ++G++  D  +   ++   T S
Sbjct: 574 NYPFGNSKVKGTANKVPDLSNEEIERCRLLLKK--EIGQLESDDYIQFEKEFLETYS 628


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 34  YNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKEQLEACRKL 89
           Y+FL G    AY   G+    AHTLG  +   G +   T N     +  +  C  L
Sbjct: 441 YHFLTGNFKCAYSYLGFAIHSAHTLGLEH---GSTDNSTLNEVSTEETSIRICWSL 493


>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 97  GKIAKDYKLFGHRQLSSTLSPGDKLFEIIVEWPHFASDFTNL 138
           G +AKD+K      L S +  G  ++E    +    S+  NL
Sbjct: 775 GVVAKDWKFKSRSVLRSLIGKGKNIWENTESYQKLESELENL 816


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)

Query: 69  FIGTFNNNDPPKEQL-EACRKLIKRGVDLGKIAKD 102
           F G F  NDPP+ Q+ E+ + L+  GV +  I  D
Sbjct: 514 FHGLFGINDPPRPQVRESVQYLMTGGVRVIMITGD 548


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 81   EQLEA-CRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSPGDKLFEIIVEW 128
            EQLE  C  + +R   +  + KD+   G       L P D + E++V W
Sbjct: 1154 EQLEQDCNDICER---MKNVEKDFSNEGIFSNHKALHPDDHICEVMVPW 1199


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 6/79 (7%)

Query: 42   GSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAK 101
            GSA C   + S+    L   N+ +         + DP K  L+   +L+  G D    +K
Sbjct: 979  GSASCASTFLSIYEMALKIKNWDVCTELSSYLVSLDPEKRLLKTALELLDEGPD----SK 1034

Query: 102  DYKLFGHRQLSSTLSPGDK 120
            D +L+   Q ++ +   DK
Sbjct: 1035 DIRLYD--QFNNLMKEVDK 1051


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.325    0.144    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 739,422
Number of Sequences: 5004
Number of extensions: 30513
Number of successful extensions: 70
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 63
Number of HSP's gapped (non-prelim): 12
length of query: 146
length of database: 2,362,478
effective HSP length: 67
effective length of query: 79
effective length of database: 2,027,210
effective search space: 160149590
effective search space used: 160149590
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 50 (24.2 bits)