Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
(146 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 32 0.21
02_04_0525 - 23672984-23673085,23673315-23673419,23673820-236739... 31 0.37
05_06_0120 + 25748882-25749297,25749411-25749600,25749682-257498... 29 1.1
03_05_0845 - 28155065-28155374,28156201-28156342,28156375-281565... 29 1.5
01_06_0667 - 31048987-31049134,31049630-31049865,31050720-310509... 29 1.5
04_03_0995 + 21521877-21521977,21522152-21522217,21523630-215236... 28 2.6
11_06_0686 + 26280772-26281611 28 3.4
07_01_1097 - 10068431-10068655,10068797-10068880,10068945-100692... 27 4.5
08_02_0824 + 21561699-21562415,21563294-21563362,21563424-215634... 27 6.0
01_05_0680 - 24238840-24241242 27 7.9
01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078 27 7.9
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 31.9 bits (69), Expect = 0.21
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 21 TFHIESRKWHDIGYNFL---VGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNND 77
T H + GY+F+ +GG G + GR W Y + + I+ G + ND
Sbjct: 375 TAHARESVDDNTGYSFVNCSIGGTGRIWLGRAWRPYSTVVFAYTSMSDIIASEGWNDWND 434
Query: 78 PPKEQ 82
P ++Q
Sbjct: 435 PSRDQ 439
>02_04_0525 -
23672984-23673085,23673315-23673419,23673820-23673979,
23674085-23674162,23674383-23674524,23674641-23674785,
23674888-23674950,23675042-23675101,23675364-23675441,
23675524-23675598,23675744-23675860,23675960-23676190,
23676300-23676419,23676512-23676588,23676669-23676769,
23676844-23676950,23677094-23677251,23677383-23677599
Length = 711
Score = 31.1 bits (67), Expect = 0.37
Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Query: 6 FIFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAI 65
F+F + V ++Q + + + +++G+++ + G G G D +G +
Sbjct: 279 FVFSMKASNPVIMVQAYRLLVAEMYNLGWDYPLHL-GVTEAGEGEDGRMKSAIGIGTLLM 337
Query: 66 -GISFIGTFNNNDPPKEQLEACRKLIKRG 93
G+ + +PP+E+++ CR+L G
Sbjct: 338 DGLGDTIRVSLTEPPEEEIDPCRRLANLG 366
>05_06_0120 +
25748882-25749297,25749411-25749600,25749682-25749888,
25750234-25750401,25751155-25751390,25751617-25751764
Length = 454
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 31 DIGYNFL---VGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKE 81
D G++F+ V G G+ Y GR W + Y I G +N DP +E
Sbjct: 352 DTGFSFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDNIIIPRGWYNWGDPTRE 405
>03_05_0845 -
28155065-28155374,28156201-28156342,28156375-28156505,
28156591-28156784,28156859-28156969,28157234-28157399,
28157501-28157668,28157766-28158787
Length = 747
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 21 TFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNN 76
TF E R G VG DG+ Y G W + H +G ++A G + G + N
Sbjct: 86 TFEGEFRGGRIEGQGVFVGPDGATYRG-AWAADRRHGVGAKSYANGDYYEGQWRRN 140
>01_06_0667 -
31048987-31049134,31049630-31049865,31050720-31050926,
31051005-31051197,31051282-31051652
Length = 384
Score = 29.1 bits (62), Expect = 1.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 31 DIGYNFL---VGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKE 81
D G++F+ V G G+ Y GR W + Y I G +N DP +E
Sbjct: 282 DTGFSFVNCRVTGSGALYLGRAWGTFSRVVFAYTYMDDIIIPRGWYNWGDPNRE 335
>04_03_0995 +
21521877-21521977,21522152-21522217,21523630-21523696,
21523959-21524041,21524318-21524359,21524614-21524733,
21524806-21524869,21525028-21525113,21525217-21525299,
21525994-21526070,21526549-21526567,21526568-21526661,
21527042-21527087
Length = 315
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/73 (20%), Positives = 30/73 (41%)
Query: 16 VRLIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNN 75
+ ++ T H++ R + + YN + CG WD H + N+++
Sbjct: 62 IMVLSTLHLQLRVEYTLYYNIWFRSYPFSICGMLWDYELKHKIFQCNYSLYAFISLNLKY 121
Query: 76 NDPPKEQLEACRK 88
ND K L+ ++
Sbjct: 122 NDIAKHALDVVKR 134
>11_06_0686 + 26280772-26281611
Length = 279
Score = 27.9 bits (59), Expect = 3.4
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 80 KEQLEACRKLIKRGVDLGKIAKDYKLFGHRQLSSTLSP 117
++ + C++L +R D+G++ KD + G SS+ SP
Sbjct: 28 RQNKKRCQRLAERVGDIGELTKDLAVDGGGSSSSSSSP 65
>07_01_1097 -
10068431-10068655,10068797-10068880,10068945-10069292,
10069477-10069510,10069617-10070230,10079179-10079553,
10079599-10079853,10079983-10080300
Length = 750
Score = 27.5 bits (58), Expect = 4.5
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 18 LIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSV 53
L+Q I KW +IG +F+VG +A G+DS+
Sbjct: 41 LLQPLRIPEWKWDEIGMDFIVGLPKTA---TGYDSI 73
>08_02_0824 +
21561699-21562415,21563294-21563362,21563424-21563459,
21564533-21564600,21565259-21565277,21565662-21565763,
21566173-21566288,21566501-21566595,21568093-21568264,
21568413-21568493,21569732-21569801,21570106-21570132
Length = 523
Score = 27.1 bits (57), Expect = 6.0
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 45 YCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPPKEQLEACRKLIKRGVDLGKIAKDY 103
YCG W S + ++F I F+G +++ +E+LE R+ + + K+ KD+
Sbjct: 384 YCG--WGSRALEAIEKDDFVI--EFVGEVIDDETCEERLEDMRRRGDKNFYMCKVKKDF 438
>01_05_0680 - 24238840-24241242
Length = 800
Score = 26.6 bits (56), Expect = 7.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 62 NFAIGISFIGTFNNNDPPKEQLEACRKLIKRGVDL 96
N ++ SFI + N +E L K+IK G+DL
Sbjct: 630 NISVYNSFITGYKNLKMMEEALRLYEKMIKEGIDL 664
>01_01_0496 + 3660103-3660315,3660601-3661803,3662950-3663078
Length = 514
Score = 26.6 bits (56), Expect = 7.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 79 PKEQLEACRKLIKRGV 94
P+E LEACR L +RGV
Sbjct: 95 PEEALEACRYLAQRGV 110
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.325 0.144 0.463
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,782,817
Number of Sequences: 37544
Number of extensions: 205510
Number of successful extensions: 579
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 11
length of query: 146
length of database: 14,793,348
effective HSP length: 76
effective length of query: 70
effective length of database: 11,940,004
effective search space: 835800280
effective search space used: 835800280
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 56 (26.6 bits)
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