GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000673-TA|BGIBMGA000673-PA|IPR002502|N-acetylmuramoyl-L-
alanine amidase, family 2, IPR006619|Animal peptidoglycan recognition
protein PGRP
         (146 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    28   2.3  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AF039050-13|AAC47927.1|   75|Caenorhabditis elegans Neuropeptide...    28   2.3  
AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical...    27   7.1  
AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical...    27   7.1  
Z66565-7|CAA91483.1|  165|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 3   LFYFIFQSQCVLRVRLIQTFHIESRKWHDIGYNFL 37
           LF  +F S  ++   +  T+HI+ R+ HDI +N L
Sbjct: 567 LFTILFLSASIIIFVITVTYHIKVRRQHDIIHNEL 601


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query: 3   LFYFIFQSQCVLRVRLIQTFHIESRKWHDIGYNFL 37
           LF  +F S  ++   +  T+HI+ R+ HDI +N L
Sbjct: 567 LFTILFLSASIIIFVITVTYHIKVRRQHDIIHNEL 601


>AF039050-13|AAC47927.1|   75|Caenorhabditis elegans
          Neuropeptide-like protein protein31 protein.
          Length = 75

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 7  IFQSQCVLRVRLIQTFHIESRKWHDIGYNFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIG 66
          I  S  ++ V L+  F   + +W   GY    GG G    GRG+   G +  GY  +  G
Sbjct: 2  ISTSSILVLVVLLACFMAANAQWGYGGYGRGYGGYGGY--GRGYGGYGGYGRGYGGYGRG 59

Query: 67 I 67
          +
Sbjct: 60 M 60


>AC024791-20|AAO12400.1|  574|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5b protein.
          Length = 574

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 35  NFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPP 79
           N L+G   SA    G D + A+ + + + A     +GT ++N  P
Sbjct: 391 NVLIGASISAQVASGMDYLSANKIVHRDLAARNVLVGTVSSNGVP 435


>AC024791-19|AAF60657.2|  618|Caenorhabditis elegans Hypothetical
           protein Y47G6A.5a protein.
          Length = 618

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 35  NFLVGGDGSAYCGRGWDSVGAHTLGYNNFAIGISFIGTFNNNDPP 79
           N L+G   SA    G D + A+ + + + A     +GT ++N  P
Sbjct: 435 NVLIGASISAQVASGMDYLSANKIVHRDLAARNVLVGTVSSNGVP 479


>Z66565-7|CAA91483.1|  165|Caenorhabditis elegans Hypothetical
          protein T04F8.8 protein.
          Length = 165

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 38 VGGDGSAYCGRGWDSVGA---HTLGYNNFAIGISFIGTFNNNDPP 79
          +GG G  Y  R  +S G    +  G+NN+  G  F G   NN PP
Sbjct: 28 MGGGGGGY-NRPMNSYGNGYNNGGGFNNYGNGGGFGGNNYNNGPP 71


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.144    0.463 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,986,004
Number of Sequences: 27539
Number of extensions: 162971
Number of successful extensions: 409
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 6
length of query: 146
length of database: 12,573,161
effective HSP length: 75
effective length of query: 71
effective length of database: 10,507,736
effective search space: 746049256
effective search space used: 746049256
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)