Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000672-TA|BGIBMGA000672-PA|IPR002020|Citrate synthase,
IPR010109|Citrate synthase, eukaryotic
(465 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr... 607 e-174
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 29 1.4
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 29 1.4
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 28 2.4
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 27 5.6
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 27 5.6
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 7.4
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 7.4
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 7.4
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 7.4
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 7.4
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 7.4
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 7.4
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 7.4
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 7.4
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 7.4
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 7.4
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 26 9.7
>SPAC6C3.04 |cit1||citrate synthase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 473
Score = 607 bits (1499), Expect = e-174
Identities = 280/436 (64%), Positives = 349/436 (80%), Gaps = 2/436 (0%)
Query: 29 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 88
S ++LK L E IP++Q +I++FR +HG +GEVT++ MYGG RG++ L+WE SVLD
Sbjct: 36 STRSSSLKDRLAELIPEKQAEIKKFRAEHGQDVIGEVTINQMYGGARGVRSLIWEGSVLD 95
Query: 89 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 148
+EGIRFRG +IPECQ+ LP + G++PLPE LFWLLVTG+IPT +Q +ALS +WAAR++
Sbjct: 96 PNEGIRFRGYTIPECQKLLPSSPNGKQPLPESLFWLLVTGEIPTLSQVQALSADWAARSQ 155
Query: 149 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 208
LP V +++ P LHPM+QFS AVTAL +S FAKAY G++K YW+Y YED M+LI
Sbjct: 156 LPKFVEELIDRCPPTLHPMAQFSLAVTALEHDSAFAKAYERGMNKHDYWKYEYEDCMDLI 215
Query: 209 AKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGF-DDPQFTELMRLYLTIHSDH 267
AK IA IYRN+YRDG + I +KD S N+ N+LGF ++ +F ELMRLYLTIH+DH
Sbjct: 216 AKTVPIAGRIYRNLYRDGV-VAPIQMDKDHSYNFANVLGFANNEEFVELMRLYLTIHADH 274
Query: 268 EGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTE 327
EGGNVSAHT HLVGSALS P+LS AA LNGLAGPLHGLANQEVL +L ++K++GD+ +E
Sbjct: 275 EGGNVSAHTGHLVGSALSSPFLSMAASLNGLAGPLHGLANQEVLNFLITMKKEIGDDLSE 334
Query: 328 EQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVAAVYKVVP 387
E +K ++WK L SG+VVPGYGHAVLRKTDPRYT QREFAL+HLP DP+F+LV+ +Y++VP
Sbjct: 335 ETIKSYLWKLLNSGRVVPGYGHAVLRKTDPRYTAQREFALEHLPKDPMFQLVSRLYEIVP 394
Query: 388 PILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGVSRALGVLAQLIWSRALGLP 447
+LTE GK KNP+PNVDSHSGVLLQYYGLKE ++YTV+FGVSR LGV +QLIW RALGLP
Sbjct: 395 GVLTEHGKTKNPYPNVDSHSGVLLQYYGLKEQSFYTVLFGVSRTLGVASQLIWDRALGLP 454
Query: 448 IERPKSLSTEMLMKQV 463
IERPKS STE L K V
Sbjct: 455 IERPKSFSTEALKKMV 470
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 29.1 bits (62), Expect = 1.4
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 150 PAHVVTMLNNMPGKLHPMSQFSAAVTAL-NSESKFAKAYSEGVHKSKYWEYVYED 203
P + +LN G + + + V +L NS +F + Y E + K+ WE++ +D
Sbjct: 202 PFRQLRLLNKTYGFVITLFEIGQTVPSLWNSTLEFIEKYPETLAKNNLWEWISDD 256
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 29.1 bits (62), Expect = 1.4
Identities = 34/135 (25%), Positives = 57/135 (42%), Gaps = 21/135 (15%)
Query: 331 KEFIWKTLKSGQVVPGYGHAVLRKTDP--RYTCQREFALKHLPNDPLFKLVAAVYKVVPP 388
+ F+ K+ +++PG GH + + +P R + + K+ P+ L AV V
Sbjct: 477 RAFVDSCRKANKLIPGIGHRIKSRNNPDLRVELVKGYVKKNFPSTKLLDYALAVENVT-- 534
Query: 389 ILTELGKVKNPWPNVDSHSGV----LLQYYG---LKEMNYY------TVMFGVSRALGVL 435
K N NVD V LL+ G L+E N Y MF + R++G++
Sbjct: 535 ----TSKKDNLILNVDGCIAVCFVDLLRNCGAFTLEEANEYINLGILNGMFVLGRSIGLI 590
Query: 436 AQLIWSRALGLPIER 450
+ + L P+ R
Sbjct: 591 GHHLDQKRLRAPLYR 605
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 25 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEV 65
LR L E NL+ + ++ +EQE+ + +++ S+K+ E+
Sbjct: 123 LRALQEESANLRRQRENRLREEQEQSKRRKQETPSSKISEL 163
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 96 RGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIP 131
+G +PE + LP G P G+FWL TG+ P
Sbjct: 377 KGRPVPEAR--LPSMMIGCIVFPIGIFWLAWTGNYP 410
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 27.1 bits (57), Expect = 5.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 30 AEQTNLKSILQEKIPKEQEKIREFRKKHG 58
AEQ I KIP E K+RE+ +++G
Sbjct: 33 AEQKEKDRIKALKIPYEDSKVREYLRRYG 61
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 26.6 bits (56), Expect = 7.4
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREF 53
+G + Q N+ +LQ K PK ++++R+F
Sbjct: 618 KGFTPCQENIDKVLQWKQPKNRKELRQF 645
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 9.7
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 132 TEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHP 166
T A+ K +K R +P H +T L N+ KL+P
Sbjct: 69 TSAEKKRGAKPQMRRVPIPPHRMTPLRNVWPKLYP 103
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,146,440
Number of Sequences: 5004
Number of extensions: 92932
Number of successful extensions: 278
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 261
Number of HSP's gapped (non-prelim): 18
length of query: 465
length of database: 2,362,478
effective HSP length: 75
effective length of query: 390
effective length of database: 1,987,178
effective search space: 774999420
effective search space used: 774999420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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