Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000672-TA|BGIBMGA000672-PA|IPR002020|Citrate synthase,
IPR010109|Citrate synthase, eukaryotic
(465 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0092 + 18984571-18984621,18984717-18984779,18984957-189849... 617 e-177
02_01_0702 - 5243064-5243159,5243280-5243331,5243453-5243526,524... 517 e-147
02_02_0178 + 7490447-7490659,7490996-7491112,7491337-7491517,749... 107 1e-23
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212... 72 1e-12
01_02_0089 - 10997882-10997957,10998139-10998423,10998519-109985... 34 0.28
02_05_1112 - 34190603-34190686,34190764-34190890,34192398-34192444 33 0.64
03_05_0143 - 21229424-21230173 30 3.4
09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242 29 7.9
05_06_0234 - 26602660-26602728,26602814-26602988,26603077-266031... 29 7.9
>11_05_0092 +
18984571-18984621,18984717-18984779,18984957-18984998,
18985560-18985625,18985728-18985793,18986277-18986390,
18986592-18986655,18987399-18987481,18987703-18987752,
18987844-18987921,18988020-18988148,18988244-18988286,
18988987-18989073,18989217-18989318,18989556-18989663,
18989750-18989800,18989886-18989959,18990079-18990130,
18990216-18990311
Length = 472
Score = 617 bits (1524), Expect = e-177
Identities = 276/431 (64%), Positives = 353/431 (81%), Gaps = 1/431 (0%)
Query: 29 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 88
S +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SPSDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMIGMLWETSLLD 93
Query: 89 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 148
+EGIRFRGLSIPECQ+ LP A G EPLPEGL WLL+TG +PT+ Q ALSKE R+
Sbjct: 94 PEEGIRFRGLSIPECQKVLPTAIKGGEPLPEGLLWLLLTGKVPTKEQVDALSKELVTRSS 153
Query: 149 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 208
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YED +NLI
Sbjct: 154 VPGHVYKAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMPKSKFWEPTYEDCLNLI 213
Query: 209 AKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDHE 268
A+LP +A+ +YR +++DGK I A D+ D++AN+ +MLGFDDP+ ELMRLY+TIH+DHE
Sbjct: 214 ARLPPVASYVYRRIFKDGKTIAA-DNALDYAANFSHMLGFDDPKMLELMRLYVTIHTDHE 272
Query: 269 GGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEE 328
GGNVSAHT HLVGSALSDPYLSFAA LNGLAGPLHGLANQEVL+W++ + + G + T +
Sbjct: 273 GGNVSAHTGHLVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLWIKSVIGETGSDVTTD 332
Query: 329 QLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPNDPLFKLVAAVYKVVPP 388
QLKE++WKTLKSG+VVPG+GH VLRKTDPRYTCQREFALK+LP DPLF+LV+ +Y+VVPP
Sbjct: 333 QLKEYVWKTLKSGKVVPGFGHGVLRKTDPRYTCQREFALKYLPEDPLFQLVSKLYEVVPP 392
Query: 389 ILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGVSRALGVLAQLIWSRALGLPI 448
ILTELGKVKNPWPNVD+HSGVLL ++GL E YYTV+FGVSR++G+ +QLIW RALGLP+
Sbjct: 393 ILTELGKVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIGIGSQLIWDRALGLPL 452
Query: 449 ERPKSLSTEML 459
ERPKS++ E L
Sbjct: 453 ERPKSVTMEWL 463
>02_01_0702 -
5243064-5243159,5243280-5243331,5243453-5243526,
5243633-5243683,5243840-5243899,5244131-5244232,
5244416-5244502,5244759-5244803,5245241-5245283,
5245371-5245499,5245599-5245676,5245762-5245811,
5246026-5246108,5246780-5246843,5246953-5247066,
5247558-5247623,5247713-5247778,5248405-5248446,
5248590-5248652,5248744-5248794
Length = 471
Score = 517 bits (1275), Expect = e-147
Identities = 249/446 (55%), Positives = 326/446 (73%), Gaps = 32/446 (7%)
Query: 29 SAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLD 88
SA +LKS LQE IP++Q+++++ + +HG ++G +TVDM+ GGMRG+ G++WETS+LD
Sbjct: 34 SASDLDLKSQLQELIPEQQDRLKKLKSEHGKVQLGNITVDMVLGGMRGMTGMLWETSLLD 93
Query: 89 ADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAE 148
DEGIRFRGLSIPECQ+ LP A EPLPEGL WLL+TG +PT+ Q ALSKE A+R+
Sbjct: 94 PDEGIRFRGLSIPECQKVLPTAVKDGEPLPEGLLWLLLTGKVPTKEQVDALSKELASRSS 153
Query: 149 LPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTMNLI 208
+P HV ++ +P HPM+QF+ V AL ES+F KAY +G+ KSK+WE YED +NLI
Sbjct: 154 VPGHVYEAIDALPVTAHPMTQFTTGVMALQVESEFQKAYDKGMSKSKFWEPTYEDCLNLI 213
Query: 209 AKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDHE 268
A+LP +A+ +YR +++ GK I A D+ D++AN+ +MLGFDDP+ ELMRLY+TIH+DHE
Sbjct: 214 ARLPAVASYVYRRIFKGGKTIAA-DNALDYAANFSHMLGFDDPKMLELMRLYITIHTDHE 272
Query: 269 GGNVSAHTTHL---------------VGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVW 313
GGNVSAHT HL VGSALSDPYLSFAA LNGLAGPLHGLANQEVL+W
Sbjct: 273 GGNVSAHTGHLENPGVSVWPFNALGKVGSALSDPYLSFAAALNGLAGPLHGLANQEVLLW 332
Query: 314 LEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPND 373
++ + + G + T +QLKE++WKTLKSG++V C F +
Sbjct: 333 IKSVIGETGSDVTTDQLKEYVWKTLKSGKIV----------------CHDTFIRRLFLAL 376
Query: 374 PLFKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGVSRALG 433
+ V+ +Y+VVPPILTELGKVKNPWPNVD+HSGVLL ++GL E YYTV+FGVSR++G
Sbjct: 377 VMEFYVSKLYEVVPPILTELGKVKNPWPNVDAHSGVLLNHFGLSEARYYTVLFGVSRSIG 436
Query: 434 VLAQLIWSRALGLPIERPKSLSTEML 459
+ +QLIW RALGLP+ERPKS++ E L
Sbjct: 437 IGSQLIWDRALGLPLERPKSVTMEWL 462
>02_02_0178 +
7490447-7490659,7490996-7491112,7491337-7491517,
7491594-7491679,7491785-7491889,7492059-7492121,
7492404-7492513,7492644-7492763,7492833-7492908,
7493254-7493327,7493474-7493594,7495559-7495656,
7495735-7495858,7496373-7496504
Length = 539
Score = 107 bits (258), Expect = 1e-23
Identities = 98/389 (25%), Positives = 179/389 (46%), Gaps = 38/389 (9%)
Query: 87 LDADEGI-RFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAA 145
+D DEGI R+RG I E L ++ E + +LL+ G +PT++Q +
Sbjct: 140 IDGDEGILRYRGYPIEE----LAESSSFVE-----VAYLLMYGSLPTQSQLAGWEFAISQ 190
Query: 146 RAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYEDTM 205
+ +P ++ ++ MP HPM ++A++ L+ A G K + + +
Sbjct: 191 HSAVPQGLLDIIQAMPHDAHPMGALASAMSTLSVFHPDANPALRGQDLYKSKQVRDKQIV 250
Query: 206 NLIAKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGF-------DDPQFTELMR 258
++ K P IAA Y + G+ ++ +S N+ ML +P+ ++
Sbjct: 251 RVLGKAPTIAAAAYLRL--AGRPPILPTNSLSYSENFLYMLDSLGDKEYKPNPRLARVLD 308
Query: 259 LYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLR 318
+ +H++HE +A HL S + D + + + + L GPLHG AN+ VL K+
Sbjct: 309 ILFILHAEHEMNCSTAAARHLASSGV-DVFTALSGAVGALYGPLHGGANEAVL----KML 363
Query: 319 KQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFA---LKHLPNDPL 375
++G + E + +FI + + G+GH V + DPR R+ A + DPL
Sbjct: 364 NEIG---SVENIPDFIEGVKNRKRKMSGFGHRVYKNYDPRAKVIRKLAEEVFSIVGRDPL 420
Query: 376 FKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGVSRALGVL 435
++ A+ K + + + +PNVD +SG++ + G ++ V+F + R G L
Sbjct: 421 IEVAVALEKAA--LSDDYFVKRKLYPNVDFYSGLIYRAMGF-PTEFFPVLFAIPRMAGWL 477
Query: 436 AQLIWSRALGLP---IERPKSLSTEMLMK 461
A W +L P I RP+ + T + ++
Sbjct: 478 AH--WKESLDDPDTKIMRPQQVYTGVWLR 504
>11_06_0435 -
23519908-23520054,23520398-23520514,23521152-23521263,
23521491-23521540,23522001-23522129,23522289-23522375,
23523635-23523679,23523817-23523887,23523925-23524005,
23524547-23524602,23526489-23526595
Length = 333
Score = 71.7 bits (168), Expect = 1e-12
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 280 VGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKT 337
VGSAL PYLS A LNG AGPLHG++NQEVL+W++ + Q+G + + LKE + T
Sbjct: 121 VGSALGGPYLSLVAALNGFAGPLHGMSNQEVLLWIKPITGQIGSDIRTDLLKECVENT 178
>01_02_0089 -
10997882-10997957,10998139-10998423,10998519-10998589,
10998685-10998761,10998858-10998963,10999062-10999189,
10999291-10999423,11000005-11000133,11000220-11000375,
11000770-11000846,11000938-11000998,11001249-11001383,
11001642-11001765,11001852-11001917,11002010-11002112,
11002603-11002652,11003795-11003895
Length = 625
Score = 33.9 bits (74), Expect = 0.28
Identities = 45/206 (21%), Positives = 86/206 (41%), Gaps = 16/206 (7%)
Query: 254 TELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVW 313
T+ + + + + +DH AH + + A D S +GL + GP G A + +
Sbjct: 417 TQFIEMCIMLCADHGPCVSGAHNSIVTARAGKDLVSSLVSGLLTI-GPRFGGAIDDAARY 475
Query: 314 LEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRK--TDPRYTCQREFALKHLP 371
+ + N T EF+ K G VPG GH + + D R +++A H P
Sbjct: 476 FKDAYDR---NLTPY---EFVEGMKKKGIRVPGIGHRIKSRDNRDKRVQLLQKYAHTHFP 529
Query: 372 NDPLFKLVAAV-----YKVVPPILTELGKVKNPWPNVDSHSGVL--LQYYGLKEMNYYTV 424
+ + V K +L G + + + ++ S SG+ + + E+ Y
Sbjct: 530 SVKYMEYAVQVETYTLSKANNLVLNVDGAIGSLFLDLLSGSGMFSKQEIDEIVEIGYLNG 589
Query: 425 MFGVSRALGVLAQLIWSRALGLPIER 450
+F ++R++G++ + L P+ R
Sbjct: 590 LFVLARSIGLIGHTFDQKRLKQPLYR 615
>02_05_1112 - 34190603-34190686,34190764-34190890,34192398-34192444
Length = 85
Score = 32.7 bits (71), Expect = 0.64
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 222 VYRDGKGIGAIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHS 265
+++D K I D+ D++A + +MLGFD + LM++ +T H+
Sbjct: 17 IFKDWKTIAG-DNALDYAAEFSHMLGFDGVKMLGLMQICVTKHT 59
>03_05_0143 - 21229424-21230173
Length = 249
Score = 30.3 bits (65), Expect = 3.4
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 31 EQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWE 83
+ T+L+ +QE+I K QE++ + R+ ++ + ++ + G G++G+ E
Sbjct: 83 KMTDLEGFIQERINKFQEQLDKVRRDADESETKLLLIEALEGRRPGLEGITIE 135
>09_02_0192 - 5589395-5590021,5590120-5590560,5590781-5591242
Length = 509
Score = 29.1 bits (62), Expect = 7.9
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 20 TATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYG 72
T T + R L A T + IL+E I E++ IR+ + G+ V E VD++ G
Sbjct: 229 TVTGMKRSLRAIYTTVDGILEEIIA-ERKGIRDEKISGGAENVDENLVDVLIG 280
>05_06_0234 -
26602660-26602728,26602814-26602988,26603077-26603120,
26603204-26603381,26603468-26603652,26603737-26603801,
26603985-26604066,26604342-26604434,26605096-26605191,
26605312-26605355,26605467-26605530
Length = 364
Score = 29.1 bits (62), Expect = 7.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 25 LRGLSAEQTNLKSILQEKIPKEQEKIREFRKKH 57
L+GL+A T++ L+ K+ K E +RE + +H
Sbjct: 39 LQGLAARHTDVLESLEPKVRKRVEVLREIQSQH 71
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,977,155
Number of Sequences: 37544
Number of extensions: 615898
Number of successful extensions: 1302
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 10
length of query: 465
length of database: 14,793,348
effective HSP length: 85
effective length of query: 380
effective length of database: 11,602,108
effective search space: 4408801040
effective search space used: 4408801040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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