Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000672-TA|BGIBMGA000672-PA|IPR002020|Citrate synthase,
IPR010109|Citrate synthase, eukaryotic
(465 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.) 606 e-173
SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0) 101 9e-22
SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0) 41 0.002
SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3) 31 1.5
SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.0
SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.6
SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35) 30 4.6
SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022) 30 4.6
SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.0
SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05) 29 8.0
>SB_58953| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 606 bits (1497), Expect = e-173
Identities = 279/389 (71%), Positives = 331/389 (85%), Gaps = 15/389 (3%)
Query: 74 MRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPEGLFWLLVTGDIPTE 133
MRGIKGLV ETS+LD +E LPKA GG+EPLPEG+FWLL+TG+IPT+
Sbjct: 1 MRGIKGLVTETSLLDPEE--------------LLPKADGGKEPLPEGIFWLLMTGEIPTK 46
Query: 134 AQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHK 193
Q LSKEWAA+A+LP HVV MLNN P LHPMSQFSAA+TA+N+ESKF +AY++GV+K
Sbjct: 47 QQVDNLSKEWAAKADLPQHVVQMLNNFPDTLHPMSQFSAAITAMNTESKFVQAYNKGVNK 106
Query: 194 SKYWEYVYEDTMNLIAKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGFDDPQF 253
+YW Y ++D M LIAKLP +AA IYRN+Y+DGK + +D NKDWSAN MLGF+D F
Sbjct: 107 KEYWMYCFDDAMELIAKLPTLAAYIYRNLYKDGK-VAPVDPNKDWSANLATMLGFEDAMF 165
Query: 254 TELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVW 313
TEL+RLYLTIH+DHEGGNVSAHTTHLVGSALSD YLSFAAG+NGLAGPLHGLANQEVLVW
Sbjct: 166 TELLRLYLTIHTDHEGGNVSAHTTHLVGSALSDAYLSFAAGMNGLAGPLHGLANQEVLVW 225
Query: 314 LEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALKHLPND 373
L KL +++G + +++++++FIW TL+SGQVVPGYGHAVLRKTDPRYTCQREFAL+HLPND
Sbjct: 226 LTKLSEELGPDPSDKKVRDFIWNTLQSGQVVPGYGHAVLRKTDPRYTCQREFALEHLPND 285
Query: 374 PLFKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGVSRALG 433
PLFKLV+ +YK+VP +L E GK KNPWPNVD+HSGVLLQYYGL EMNYYTV+FGVSRALG
Sbjct: 286 PLFKLVSQLYKIVPDVLLEQGKAKNPWPNVDAHSGVLLQYYGLTEMNYYTVLFGVSRALG 345
Query: 434 VLAQLIWSRALGLPIERPKSLSTEMLMKQ 462
VLA L+W RALGLPIERPKS++TE+L+KQ
Sbjct: 346 VLASLVWDRALGLPIERPKSVTTELLIKQ 374
>SB_13944| Best HMM Match : Citrate_synt (HMM E-Value=0)
Length = 297
Score = 101 bits (243), Expect = 9e-22
Identities = 80/266 (30%), Positives = 133/266 (50%), Gaps = 17/266 (6%)
Query: 198 EYVYEDTMNLIAKLPVIAATIYRNVYR-----DGKGIGAIDDNKDWSANYCNMLGFDDPQ 252
E +Y + ++AK PV+ A R + K +G +++ + +P
Sbjct: 25 EEMYNAIVKIMAKFPVLVAWAMRKIKGLPLDYGTKSLGYVENVMKMMFASPDEEYVVNPV 84
Query: 253 FTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLV 312
+ + L +H+DHE N S T +VGS+ + + S +AG++ L GPLHG ANQ VL
Sbjct: 85 IKDALDKLLILHADHEQ-NCSTSTVRIVGSSHAGLFASLSAGISALWGPLHGGANQAVLE 143
Query: 313 WLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFA---LKH 369
LE + GD T++ + + K + G+GH V + DPR T ++ A L+
Sbjct: 144 MLEAIHDNGGD--TKKYMAKA--KDKDDSFRLMGFGHRVYKNFDPRATIIKKAADDVLEA 199
Query: 370 L-PNDPLFKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEMNYYTVMFGV 428
L +DPL + + KV + E K +N +PNVD +SG++ + G+ + +TV+F +
Sbjct: 200 LGVDDPLLDIAKQLEKVA--LEDEYFKARNLYPNVDFYSGIIYRAMGI-PVEMFTVLFAI 256
Query: 429 SRALGVLAQLIWSRALGLPIERPKSL 454
R G +AQ R+ PI RP+ +
Sbjct: 257 GRLPGWIAQWKEMRSNREPIGRPRQV 282
>SB_33930| Best HMM Match : Ligase_CoA (HMM E-Value=0)
Length = 755
Score = 41.1 bits (92), Expect = 0.002
Identities = 59/256 (23%), Positives = 97/256 (37%), Gaps = 31/256 (12%)
Query: 208 IAKLPVIAATIYRNVYRDGKGIGAIDDNKDWSANYCNMLGFDDPQFTELMRLYLTIHSDH 267
+ K P + +YR+V D +G WS N L + E
Sbjct: 412 VFKAPEVCMRLYRDVSDDHRG--------SWSRNSSPPLTYVGRGSKEFESSPDVCRMRE 463
Query: 268 EGGNV-----SAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVWLEKLRKQVG 322
EG V AH T + A D S +GL + G L+ +Q
Sbjct: 464 EGIRVWKTVSGAHNTIVTARAGKDLISSLVSGLLTIGDRFGGA--------LDAAARQFS 515
Query: 323 DNF-TEEQLKEFIWKTLKSGQVVPGYGHAV--LRKTDPRYTCQREFALKHLPNDPLFKLV 379
+ + T++ +F+ K GQ++ G GH V L D R ++F KH P PL
Sbjct: 516 EGYDTKQAPMDFVNDMRKKGQLIMGIGHRVKSLNNPDVRVVILKDFVKKHFPATPLLDYA 575
Query: 380 AAVYKVVPP-----ILTELGKVKNPWPNVDSHSGVLLQYYGLK--EMNYYTVMFGVSRAL 432
V K+ IL G + + ++ H G + + E+ +F + R++
Sbjct: 576 LEVEKITTSKKPNLILNVDGCIGVSFVDLLRHCGAFSREEAQEYVEVGALNGLFVLGRSI 635
Query: 433 GVLAQLIWSRALGLPI 448
G +A L R++ +P+
Sbjct: 636 GFIAILGIYRSVTIPL 651
>SB_34113| Best HMM Match : PSD5 (HMM E-Value=3.3)
Length = 851
Score = 31.5 bits (68), Expect = 1.5
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
Query: 17 ACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRG 76
AC V RG +QTNL+ + + P+E + RK+ +++ T D G
Sbjct: 4 ACALDLVHDRGRRFDQTNLRPMAEVSFPRELQPSEIQRKEASASRESVQTSDSESPAQEG 63
Query: 77 IKGLVWETSVLDADEGIRFRGLSIPECQQQ----LPKAKGGEEPLPEGLFWLLVTGDIPT 132
+ + S A EG R S + Q + E P EG + T D +
Sbjct: 64 RQSIQTSDSESPAQEGRRSVHSSDSDSPAQEGRLSVQTSDSESPAQEGRL-SVQTSDSES 122
Query: 133 EAQAKALSKEWAARAELPA 151
AQ LS + + +E PA
Sbjct: 123 PAQEGRLSVQ-TSDSESPA 140
>SB_48678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 578
Score = 31.1 bits (67), Expect = 2.0
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 254 TELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEVLVW 313
T+ + Y + DH ++ + LV AL++P +S+ G++ LA P+ + N E L +
Sbjct: 259 TDRVHPYFDVTDDHP--HIRSLFNILVTYALANPDVSYVQGMSDLASPILVVMNDEALAY 316
>SB_32454| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1161
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 26 RGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKV 62
RGL E+ +L+ +LQE K + +E ++ HG K+
Sbjct: 544 RGLKVEKEDLERVLQEAGEKVASQQKELKEAHGQRKL 580
>SB_30707| Best HMM Match : ARID (HMM E-Value=4e-35)
Length = 1338
Score = 29.9 bits (64), Expect = 4.6
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 41 EKIPKEQEKIREFRKKHGSTKVGEVTVD 68
E+I QEKI+E RK +GS K T+D
Sbjct: 924 ERIRLLQEKIKEMRKLYGSLKAEVATID 951
>SB_58044| Best HMM Match : Vitellogenin_N (HMM E-Value=0.022)
Length = 1671
Score = 29.9 bits (64), Expect = 4.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 84 TSVLDADEGIRFRGLSIPECQQQLPKAKGG 113
+S+ DA IRF LS+PE + + PK+ G
Sbjct: 872 SSIFDALRNIRFPRLSLPELEGRFPKSSPG 901
>SB_18023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 31 EQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGEVTVDMMYGGMRGIKGLVWETSVLDAD 90
E L I + + E RE K + G ++ + +GL W+ S D D
Sbjct: 131 EHCRLMGIAVQYLINEGHNFRESDKICMKYEAGPCLGPVLDDTVLRARGLPWQAS--DQD 188
Query: 91 EGIRFRGLSIPECQQQL 107
FRGL+IP C ++
Sbjct: 189 VANFFRGLNIPSCVSRM 205
>SB_46097| Best HMM Match : zf-CCHC (HMM E-Value=7.2e-05)
Length = 430
Score = 29.1 bits (62), Expect = 8.0
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 66 TVDMMYGGMRG-IKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 119
TVD++Y +RG LV + LD E ++F L +CQ P A+ + LP+
Sbjct: 254 TVDLLYLFVRGDFTPLVSCDACLDL-EVLQFMNLDFIQCQPTAPDAQDSKHTLPD 307
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,560,036
Number of Sequences: 59808
Number of extensions: 660722
Number of successful extensions: 1385
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1373
Number of HSP's gapped (non-prelim): 10
length of query: 465
length of database: 16,821,457
effective HSP length: 85
effective length of query: 380
effective length of database: 11,737,777
effective search space: 4460355260
effective search space used: 4460355260
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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