Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000672-TA|BGIBMGA000672-PA|IPR002020|Citrate synthase,
IPR010109|Citrate synthase, eukaryotic
(465 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical pr... 685 0.0
U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical pr... 33 0.32
U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical pr... 33 0.43
AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical ... 31 1.7
AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical ... 31 1.7
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 31 2.3
U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical pr... 30 4.0
AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical ... 29 7.0
>Z30423-2|CAA83004.1| 468|Caenorhabditis elegans Hypothetical
protein T20G5.2 protein.
Length = 468
Score = 685 bits (1693), Expect = 0.0
Identities = 314/462 (67%), Positives = 379/462 (82%), Gaps = 7/462 (1%)
Query: 1 MALFRITSSRLVELQKACPTATVLLRGLSAE-QTNLKSILQEKIPKEQEKIREFRKKHGS 59
MA+ R+ + ++ + + P +T SAE TNLK +L +KIP K++ FR +HGS
Sbjct: 6 MAIRRLITKGVIPVCQVAPLST------SAEGSTNLKEVLSKKIPAHNAKVKSFRTEHGS 59
Query: 60 TKVGEVTVDMMYGGMRGIKGLVWETSVLDADEGIRFRGLSIPECQQQLPKAKGGEEPLPE 119
T V V +DM+YGGMR +KG+V ETSVLD +EGIRFRG SIPECQ+ LPKAKGGEEPLPE
Sbjct: 60 TVVQNVNIDMIYGGMRSMKGMVTETSVLDPEEGIRFRGYSIPECQKLLPKAKGGEEPLPE 119
Query: 120 GLFWLLVTGDIPTEAQAKALSKEWAARAELPAHVVTMLNNMPGKLHPMSQFSAAVTALNS 179
++WLL TGD+P+EAQ A++KEW ARA+LP HVV ML+N P LHPM+QF AA+ ALN+
Sbjct: 120 AIWWLLCTGDVPSEAQTAAITKEWNARADLPTHVVRMLDNFPDNLHPMAQFIAAIAALNN 179
Query: 180 ESKFAKAYSEGVHKSKYWEYVYEDTMNLIAKLPVIAATIYRNVYRDGKGIGAIDDNKDWS 239
ESKFA AY+ GV K+ YWEY YED+M+L+AKLP +AA IYRN+YRDG + ID KDWS
Sbjct: 180 ESKFAGAYARGVAKASYWEYAYEDSMDLLAKLPTVAAIIYRNLYRDGSAVSVIDPKKDWS 239
Query: 240 ANYCNMLGFDDPQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLA 299
AN+ +MLG+DDP F ELMRLYL IHSDHEGGNVSAHT+HLVGSALSDPYLSF+A + GLA
Sbjct: 240 ANFSSMLGYDDPLFAELMRLYLVIHSDHEGGNVSAHTSHLVGSALSDPYLSFSAAMAGLA 299
Query: 300 GPLHGLANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRY 359
GPLHGLANQEVLV+L K+ ++G N+TEEQLKE++WK LKSGQVVPGYGHAVLRKTDPRY
Sbjct: 300 GPLHGLANQEVLVFLNKIVGEIGFNYTEEQLKEWVWKHLKSGQVVPGYGHAVLRKTDPRY 359
Query: 360 TCQREFALKHLPNDPLFKLVAAVYKVVPPILTELGKVKNPWPNVDSHSGVLLQYYGLKEM 419
CQREFALKHLPND LFKLV+ +YK+ P IL E GK KNPWPNVDSHSGVLLQY+G+ EM
Sbjct: 360 ECQREFALKHLPNDDLFKLVSTLYKITPGILLEQGKAKNPWPNVDSHSGVLLQYFGMTEM 419
Query: 420 NYYTVMFGVSRALGVLAQLIWSRALGLPIERPKSLSTEMLMK 461
++YTV+FGVSRALG L+QLIW+R +GLP+ERPKS ST+ L+K
Sbjct: 420 SFYTVLFGVSRALGCLSQLIWARGMGLPLERPKSHSTDGLIK 461
>U88311-8|AAB42341.2| 918|Caenorhabditis elegans Hypothetical
protein C10H11.1 protein.
Length = 918
Score = 33.5 bits (73), Expect = 0.32
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Query: 309 EVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDPRYTCQREFALK 368
E+ VW + +V + +E K+ + K +K+G+ + G ++ + P +T R+
Sbjct: 377 EIYVWTGRYSNKVSSAYAQEYAKQLMKKPVKNGKFILGDAESIDQDGRPEWTLSRKIHQG 436
Query: 369 HLPNDPLFKLVAAVYKVVPPILT 391
L D LFK + + +LT
Sbjct: 437 VL--DTLFKAKFSDWPETREVLT 457
>U58727-5|AAB00585.1| 1106|Caenorhabditis elegans Hypothetical protein
D1005.1 protein.
Length = 1106
Score = 33.1 bits (72), Expect = 0.43
Identities = 42/202 (20%), Positives = 79/202 (39%), Gaps = 21/202 (10%)
Query: 251 PQFTELMRLYLTIHSDHEGGNVSAHTTHLVGSALSDPYLSFAAGLNGLAGPLHGLANQEV 310
P + + + L + +DH AH T + A D S +GL + G
Sbjct: 884 PHANKFIEICLMLTADHGPAVSGAHNTIVCARAGKDLISSLTSGLLTIGDRFGGA----- 938
Query: 311 LVWLEKLRKQVGDNFTEE-QLKEFIWKTLKSGQVVPGYGHAV--LRKTDPRYTCQREFAL 367
L+ +Q + F + +F+ + K G+ + G GH V + D R + FA+
Sbjct: 939 ---LDGAARQFSEAFDQGWSANQFVSEMRKKGKHIMGIGHRVKSINNPDKRVEILKRFAM 995
Query: 368 ---KHLPNDPLFKLVAAVYKVVPP-----ILTELGKVKNPWPNVDSHSGVLLQYYGLK-- 417
+ PLF+ V K+ IL G + + ++ HSG+ + +
Sbjct: 996 DKKEFAQETPLFEYALEVEKITTAKKPNLILNVDGAIAILFVDILRHSGMFTKQEAEETI 1055
Query: 418 EMNYYTVMFGVSRALGVLAQLI 439
E+ +F + R++G + +
Sbjct: 1056 EIGSLNGLFVLGRSIGFIGHYL 1077
>AC024799-5|AAO25979.1| 474|Caenorhabditis elegans Hypothetical
protein Y49C4A.8b protein.
Length = 474
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 2 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 56
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC024799-4|AAK72318.1| 536|Caenorhabditis elegans Hypothetical
protein Y49C4A.8a protein.
Length = 536
Score = 31.1 bits (67), Expect = 1.7
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 2 ALFRITSSRLVELQKACPTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 56
++F I S+ + + TV + G+S NLK I ++K+ K+ E++ E RKK
Sbjct: 251 SIFFINSNPFFDFPRPVLQKTVPIGGISV---NLKWIKEQKLTKDWEEVLEMRKK 302
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.7 bits (66), Expect = 2.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 19 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKKHGSTKVGE 64
PT+T+ L L + NL S+ E+ K +EKI + R++ + + E
Sbjct: 2424 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRRKQESDLAE 2469
Score = 29.5 bits (63), Expect = 5.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 19 PTATVLLRGLSAEQTNLKSILQEKIPKEQEKIREFRKK 56
PT+T+ L L + NL S+ E+ K +EKI + R++
Sbjct: 2482 PTSTIDLNMLQGIEDNLNSLPAEESDKIREKINDLRRR 2519
>U29381-6|AAA68754.1| 237|Caenorhabditis elegans Hypothetical
protein F35D11.8 protein.
Length = 237
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 160 MPGKLHPMSQFSAAVTALNSESKFAKAYSEGVHKSKYWEYVYE----DTMNLIAKLPVIA 215
+ G+L P +F+ + +F + EG+ KY ++Y+ DT + KL V A
Sbjct: 107 LDGQLSPRCKFAIYKGQVKGAKRFNQTSEEGICNIKYELFIYDDINTDTSFIRTKLGVSA 166
Query: 216 ATIYRNVYRD 225
+ R+V D
Sbjct: 167 GSNVRSVQAD 176
>AL110500-5|CAB60428.1| 1050|Caenorhabditis elegans Hypothetical
protein Y87G2A.5 protein.
Length = 1050
Score = 29.1 bits (62), Expect = 7.0
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 110 AKGGEEPLPEGLFWLLVTGDIPTEAQAKALSKEWAARAEL 149
A G E+PLPE +W V+ EA AKA K AE+
Sbjct: 521 ADGREQPLPEENYW--VSARTEQEALAKAAQKFQVPEAEI 558
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,417,364
Number of Sequences: 27539
Number of extensions: 490220
Number of successful extensions: 1209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 11
length of query: 465
length of database: 12,573,161
effective HSP length: 84
effective length of query: 381
effective length of database: 10,259,885
effective search space: 3909016185
effective search space used: 3909016185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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