GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000672-TA|BGIBMGA000672-PA|IPR002020|Citrate synthase,
IPR010109|Citrate synthase, eukaryotic
         (465 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    25   1.3  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    25   1.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.1  
DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein p...    22   9.5  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 305 LANQEVLVWLEKLRKQVGDNFTEEQLKEFIWKTLKSGQVVPGYGHAVLRKTDP 357
           L N EV  W   LR ++   FT  +LKE  +  ++    +  Y   ++ K +P
Sbjct: 120 LLNLEVERW-RPLRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEKNEP 171


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 316 KLRKQVGDNFTEEQLKEFIW 335
           K+ KQ+  N  E Q  E+IW
Sbjct: 355 KIIKQISSNIYERQNNEYIW 374


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 207 LIAKLPVIAATIYRNVYRDGKGIGAIDDNKD 237
           L  KLP      +  +Y   KG   IDDN D
Sbjct: 248 LFRKLPFAGLHSHTIIYLSAKGHRPIDDNID 278


>DQ257415-1|ABB81846.1|  430|Apis mellifera yellow-like protein
           protein.
          Length = 430

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 113 GEEPLPEGLFWLLVTGDIPTEA-QAKALSK-EWAARAELPAHVVTMLNNM 160
           G+ PL E  FW  +    P EA +  A+ K E+     LP  +    N +
Sbjct: 30  GQAPLLERFFWRTLDYAYPDEASKTMAMMKGEYIPENALPVGIEIWRNKL 79


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,128
Number of Sequences: 429
Number of extensions: 6850
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 465
length of database: 140,377
effective HSP length: 60
effective length of query: 405
effective length of database: 114,637
effective search space: 46427985
effective search space used: 46427985
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)