Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000671-TA|BGIBMGA000671-PA|undefined
         (283 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57670.1 68418.m07207 protein kinase family protein contains ...    30   1.5  
At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4 f...    30   2.0  
At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein bet...    29   3.5  
At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4 f...    29   3.5  
At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major int...    29   4.7  
At2g45590.1 68415.m05669 protein kinase family protein contains ...    29   4.7  
At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel...    28   6.2  
At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel...    28   6.2  
At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel...    28   6.2  
At3g13030.1 68416.m01623 hAT dimerisation domain-containing prot...    28   6.2  
At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar t...    28   8.2  

>At5g57670.1 68418.m07207 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 416

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 6/73 (8%)

Query: 55  DINKEVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMIT 114
           D+NKE +          GI SHV     A  LG   +K G  +V      G LY ++   
Sbjct: 140 DMNKEKEFLTEL-----GIISHVSHPNTALLLGCCVEK-GLYLVFRFSENGTLYSALHEN 193

Query: 115 VNTMNDWPVEYVI 127
            N   DWPV Y I
Sbjct: 194 ENGSLDWPVRYKI 206


>At5g25100.1 68418.m02974 endomembrane protein 70, putative TM4
           family;
          Length = 644

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 24/90 (26%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 199 MYVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIYNAT 258
           +YVG     LG ++  +I ++   L P +  G+  A L ++   + +FA    +++Y   
Sbjct: 348 VYVGTGVQCLGMVLVTMIFAMLGFLSPSNRGGLMTAML-LLWVFMGLFAGYASSRLYKMF 406

Query: 259 IGTEY----INSIFYFTISTQVIVF-LSAL 283
            GTE+      + F F      I F L+AL
Sbjct: 407 KGTEWKRIAFRTAFLFPAVVSAIFFVLNAL 436


>At5g20940.1 68418.m02488 glycosyl hydrolase family 3 protein
           beta-glucosidase, common nasturtium, PIR:T10521
          Length = 626

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 157 VKNRTLRVGILDVTYLSTLPMGIAIAHITGHLVYAHTTVGKMMYVGATAAALGPIVAPLI 216
           +KN+    GI+   YL    +   +     H VYA TT G  M++G  ++ L  ++  L 
Sbjct: 298 LKNKLKFRGIVISDYLGVDQINTPLGANYSHSVYAATTAGLDMFMG--SSNLTKLIDELT 355

Query: 217 RSITSKLLP 225
             +  K +P
Sbjct: 356 SQVKRKFIP 364


>At5g10840.1 68418.m01259 endomembrane protein 70, putative TM4
           family;
          Length = 648

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 199 MYVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIYNAT 258
           +YVG     LG +   +I ++   L P +  G+  A L ++   + +FA    +++Y   
Sbjct: 352 VYVGTGVQCLGMVFVTMIFAMLGFLSPSNRGGLMTAML-LLWVFMGLFAGYASSRLYKMF 410

Query: 259 IGTEY----INSIFYFTISTQVIVF-LSAL 283
            GTE+      + F F      I F L+AL
Sbjct: 411 KGTEWKRIAFRTAFLFPAVVSAIFFVLNAL 440


>At4g18910.1 68417.m02788 aquaglyceroporin / NOD26-like major
           intrinsic protein 2 (NLM2) contains Pfam profile: MIP
           PF00230; similar to SP:P08995 {Glycine max} Nodulin-26
           (N-26); identical to cDNA aquaglyceroporin (nlm2 gene)
           GI:11071655, aquaglyceroporin [Arabidopsis thaliana]
           GI:11071656
          Length = 294

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 6/104 (5%)

Query: 126 VIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMGIAIAHIT 185
           V +   L + + G    IFAGC A   +    K  TL  GI  V  L+ + +  ++ HI+
Sbjct: 48  VPFLQKLMAEVLGTYFLIFAGCAAVAVNTQHDKAVTL-PGIAIVWGLTVMVLVYSLGHIS 106

Query: 186 G-H----LVYAHTTVGKMMYVGATAAALGPIVAPLIRSITSKLL 224
           G H    +  A  + G+       A  +  ++   + + T +LL
Sbjct: 107 GAHFNPAVTIAFASCGRFPLKQVPAYVISQVIGSTLAAATLRLL 150


>At2g45590.1 68415.m05669 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 683

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 67  FHQWNGIASHVVPL-FLAFFLGSYSDKRGRKIVLLAGLL 104
           FH    ++SH++    +   LG  SD+RGRK++L+  L+
Sbjct: 136 FHNELSLSSHLIGSPHVVSLLGFSSDRRGRKLILVYELM 174


>At5g57940.3 68418.m07250 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 710

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 119 NDWPVEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMG 178
           N+ P ++ IYT AL S +  +   I   C+     + ++   TL  G+   TY   +   
Sbjct: 333 NNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLS--TLGQGLETSTYPMEIIFS 390

Query: 179 IAIAHITGHLVYAHTTVGKM 198
           I++A I+G +++A   +G M
Sbjct: 391 ISLA-ISGLILFA-LLIGNM 408


>At5g57940.2 68418.m07249 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 119 NDWPVEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMG 178
           N+ P ++ IYT AL S +  +   I   C+     + ++   TL  G+   TY   +   
Sbjct: 340 NNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLS--TLGQGLETSTYPMEIIFS 397

Query: 179 IAIAHITGHLVYAHTTVGKM 198
           I++A I+G +++A   +G M
Sbjct: 398 ISLA-ISGLILFA-LLIGNM 415


>At5g57940.1 68418.m07248 cyclic nucleotide-regulated ion channel /
           cyclic nucleotide-gated channel (CNGC5) identical to
           cyclic nucleotide and calmodulin-regulated ion channel
           (cngc5) GI:4581205 from [Arabidopsis thaliana]
          Length = 717

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 119 NDWPVEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMG 178
           N+ P ++ IYT AL S +  +   I   C+     + ++   TL  G+   TY   +   
Sbjct: 340 NNPPFDFGIYTQALSSGIVSSQNFIVKYCYCLWWGLQNLS--TLGQGLETSTYPMEIIFS 397

Query: 179 IAIAHITGHLVYAHTTVGKM 198
           I++A I+G +++A   +G M
Sbjct: 398 ISLA-ISGLILFA-LLIGNM 415


>At3g13030.1 68416.m01623 hAT dimerisation domain-containing protein
           contains Pfam profile: PF04937 domain of unknown
           function (DUF659), weak hit to PF05699 hAT family
           dimerisation domain
          Length = 544

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 9/111 (8%)

Query: 9   VEPTMF----FYMMAYMITNVIEQTFYVFQTCHINHGYSTEI-CYNISKHA--DINKEVQ 61
           + PT F    F++   ++T +I    ++ + CH+    ST+I  Y + K    + ++  Q
Sbjct: 395 LNPTAFYSTNFHLDIEVVTGLISSLIHMVEDCHVQFKISTQIDMYRLGKDCFNEASQADQ 454

Query: 62  VT-VSTFHQWNGIASHVVPL-FLAFFLGSYSDKRGRKIVLLAGLLGKLYFS 110
           +T +S    W   AS    L  LA  + S + +   K  L   L  KL  S
Sbjct: 455 ITGISPAEWWAHKASQYPELQSLAIKILSQTCEGASKYKLKRSLAEKLLLS 505


>At4g39830.1 68417.m05643 L-ascorbate oxidase, putative similar to
           SP|P14133 L-ascorbate oxidase precursor (EC 1.10.3.3)
           (Ascorbase) {Cucumis sativus}; contains Pfam profile
           PF00394: Multicopper oxidase
          Length = 582

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 7/81 (8%)

Query: 133 PSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPM-----GIAIAHITGH 187
           PS ++G      A C  +I  V   K   LR+G L  T LS L        + +    GH
Sbjct: 220 PSLVSGVCNVSNADCSRFILTVIPGKTYRLRIGSL--TALSALSFQIEGHNLTVVEADGH 277

Query: 188 LVYAHTTVGKMMYVGATAAAL 208
            V   T     +Y G T + L
Sbjct: 278 YVEPFTVKNLFVYSGETYSVL 298


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,746,823
Number of Sequences: 28952
Number of extensions: 217006
Number of successful extensions: 581
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 580
Number of HSP's gapped (non-prelim): 12
length of query: 283
length of database: 12,070,560
effective HSP length: 80
effective length of query: 203
effective length of database: 9,754,400
effective search space: 1980143200
effective search space used: 1980143200
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)