Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000671-TA|BGIBMGA000671-PA|undefined
(283 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 31 0.19
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch... 28 1.3
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ... 28 1.3
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 28 1.7
SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|c... 27 3.0
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 27 4.0
SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces pomb... 26 7.0
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 7.0
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 7.0
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 25 9.3
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 31.1 bits (67), Expect = 0.19
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 9/111 (8%)
Query: 73 IASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMITVNT-MNDWPVEYVIYTAA 131
+A++++ + L SD GR L LL L I++ +T + + V+Y A
Sbjct: 136 VANNIISAAIKPPLARLSDVFGRLEAFLFSLLLYLVGLILMAASTNVQTYAGGSVLYNAG 195
Query: 132 LPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMGIAIA 182
TG +L + ++AD SS+ NR+L +GI + ++ T+ +G +A
Sbjct: 196 Y----TGVELIMTI----FMADTSSMANRSLVLGISYLPFVVTIWIGPRVA 238
>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 28.3 bits (60), Expect = 1.3
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 7/111 (6%)
Query: 68 HQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMITVNTMNDWPVEYVI 127
+ W G A + + F G S+ GRKIVL ++ L+ S M W ++
Sbjct: 127 YSWIGTAYSLAETSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLW----LV 182
Query: 128 YTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMG 178
A+ G +++ IAD++ ++ R G + VT+ MG
Sbjct: 183 LCRAVQGIGGGGIMSLVT---IVIADITPLQTRPYYTGCMGVTWGVASVMG 230
>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
Str2 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 597
Score = 28.3 bits (60), Expect = 1.3
Identities = 39/172 (22%), Positives = 69/172 (40%), Gaps = 15/172 (8%)
Query: 48 YNISKHADINKEVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKL 107
Y++ ++A N ++T + I VV + + + L +LG
Sbjct: 87 YSLQRYATSNFSAHSNLATINLVGNILLAVVRAPMVKAADVFGRSESLSLALGMTVLG-- 144
Query: 108 YFSIMITVNTMNDWPVEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGIL 167
Y S+ + N + + V Y++Y TG L IAD SS+ NR + I
Sbjct: 145 YLSLAFSRN-IQMFTVAYILYICGQ----TGLGLL----SQLIIADTSSLLNRGILSAIP 195
Query: 168 DVTYLSTLPMGIAIAHITGHLVYAHTTVGKMMYVGATAAALGPIVAPLIRSI 219
++ YL+T+ +G +A + G + G A L + PL+ S+
Sbjct: 196 ELPYLATVWIGPVLA----QAFHPEKNYGWRLGYGIWAFILPTVSLPLLASL 243
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 27.9 bits (59), Expect = 1.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 57 NKEVQVTVSTFHQWNGIASHVVPLF 81
N ++ + T H++NGI S+ VPLF
Sbjct: 343 NNDISNLMHTPHEYNGIDSYSVPLF 367
>SPAPB1E7.08c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.0
Identities = 19/99 (19%), Positives = 41/99 (41%), Gaps = 3/99 (3%)
Query: 184 ITGHLVYAHTTVGKM-MYVG--ATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVME 240
+TG ++A TT Y+G T + I+ ++ + T ++ P RG A +
Sbjct: 446 LTGVFLFASTTAKTSNAYLGWNCTFSFFSDIMYGVLYAYTPEVFPSKVRGTAVGLAASAN 505
Query: 241 NAVAIFASIVYTQIYNATIGTEYINSIFYFTISTQVIVF 279
+ IF+ ++ + T +++ + V+ F
Sbjct: 506 RILGIFSPVIAMRANLTTSAPIFVSGALFIFAGILVVFF 544
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 26.6 bits (56), Expect = 4.0
Identities = 27/111 (24%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 68 HQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMITVNTMNDWPVEYVI 127
+ W G A + + F G S+ GRKIVL ++ L+ S M W ++
Sbjct: 127 YSWIGTAYTLAQTSILPFCGIMSEVVGRKIVLYTSIVLFLFGSAMCGAAQNMLW----LV 182
Query: 128 YTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMG 178
A+ G ++ IAD++ ++ R G + VT+ MG
Sbjct: 183 LCRAVQGIGGGGITSLVT---IVIADITPLQTRPYYTGCMGVTWGLASVMG 230
>SPAC869.07c |mel1||alpha-galactosidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 436
Score = 25.8 bits (54), Expect = 7.0
Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 71 NGIASHVVPLF-LAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMITVNTMNDWPVEYVIYT 129
NGI S L + F G YS G+ AG G L I +T DW V+Y+ Y
Sbjct: 99 NGIGSMAKKLHDMGFKFGMYSSA-GK--YTCAGFPGSLNHE-QIDADTFADWGVDYLKYD 154
Query: 130 AALPSALTGADL 141
+G L
Sbjct: 155 NCFNEGKSGVPL 166
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 25.8 bits (54), Expect = 7.0
Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 6/93 (6%)
Query: 134 SALTGADLAIFAGCFAY----IADVSSVKNRTLRVGILDVTYLSTLPMGIAIAHITGHLV 189
S +TG ++ G F + IA ++ +T+ + Y + +P+ + A +
Sbjct: 198 SEITGRKTPLYIGLFLFSVFQIAVATAQDIQTIMICRFFGGYGACVPLCVVAAAFAD--M 255
Query: 190 YAHTTVGKMMYVGATAAALGPIVAPLIRSITSK 222
Y + G + + A +GP+VAP++ +K
Sbjct: 256 YPNRYRGTAITIFAAVIFVGPLVAPIVGGFLTK 288
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 25.8 bits (54), Expect = 7.0
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 20 YMITNVIEQTFYVFQTCHINHGYSTEICYNISKHADINKEVQVTVSTFHQWNGIASHVV 78
Y +T I FYV H+ H YS + I++ ++ +V V ST +G+ V
Sbjct: 21 YFLTTPI---FYVNAAPHLGHLYSLVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTV 76
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.4 bits (53), Expect = 9.3
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 90 SDKRGRKIVLLAGLLGKLYFSIMITVNTMNDWPVEYVIYTAALPSALTGADLAIFAGCFA 149
S+ GRK+ LL G+ G F+I + V ++ ++ A L + A F
Sbjct: 194 SELSGRKLPLLIGMFGFGIFNISVAVAK----DIQTIMMCRFFSGFFASAPLTVVAAAF- 248
Query: 150 YIADVSSVKNRTLRVGI 166
AD+ S K+R + I
Sbjct: 249 --ADMYSNKHRGTAITI 263
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.327 0.138 0.414
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,172,173
Number of Sequences: 5004
Number of extensions: 46248
Number of successful extensions: 167
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 160
Number of HSP's gapped (non-prelim): 11
length of query: 283
length of database: 2,362,478
effective HSP length: 72
effective length of query: 211
effective length of database: 2,002,190
effective search space: 422462090
effective search space used: 422462090
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)
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