GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000671-TA|BGIBMGA000671-PA|undefined
         (283 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0694 - 6136025-6136749,6137425-6137971                           36   0.028
05_03_0423 + 13792424-13792564,13792712-13792944,13793681-137937...    36   0.049
02_05_0242 + 27121152-27121316,27121404-27121515,27121616-271217...    33   0.26 
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548...    31   0.79 
03_03_0264 - 15996707-15996919,15997002-15997139                       29   4.2  
09_06_0188 - 21441377-21442201                                         28   7.4  

>08_01_0694 - 6136025-6136749,6137425-6137971
          Length = 423

 Score = 36.3 bits (80), Expect = 0.028
 Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 3/121 (2%)

Query: 137 TGADLAIFAGCFAYIADVSSVKNRTLRVGILDVTYLSTLPMGIAIAHITGHLV-YAHTTV 195
           TG  L   A     + D   V+      G  DVT  +T+  G+A A + G ++ +A    
Sbjct: 109 TGMSLFTVALLVVPVMDAVYVRGVPGLYGAFDVTVAATVLCGVADALVQGGVIGFAGELP 168

Query: 196 GKMMYVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIY 255
            + M       A   ++  ++R IT  + P D  G+  +  +++   V+I   I+    Y
Sbjct: 169 ARYMQAVVAGTATSGVLVSVLRVITKGVYPQDANGLRKS--AILYFVVSIVVMIICIVCY 226

Query: 256 N 256
           N
Sbjct: 227 N 227


>05_03_0423 +
           13792424-13792564,13792712-13792944,13793681-13793756,
           13794003-13794089,13794500-13794553,13794654-13794695,
           13794818-13794896,13795059-13795129,13795235-13795297
          Length = 281

 Score = 35.5 bits (78), Expect = 0.049
 Identities = 17/61 (27%), Positives = 35/61 (57%)

Query: 194 TVGKMMYVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQ 253
           ++ ++ Y+GA+   +  +V P IRSI SK   P E+G+    L+ + +   + + IV++ 
Sbjct: 176 SLSQVPYLGASFVIVSILVNPSIRSIVSKRAGPFEQGMVQGCLTGISSTANVISPIVFSP 235

Query: 254 I 254
           +
Sbjct: 236 L 236


>02_05_0242 +
           27121152-27121316,27121404-27121515,27121616-27121728,
           27122024-27122379,27122515-27122590,27122682-27122768,
           27122885-27122965,27123060-27123092,27123335-27123388,
           27123482-27123523,27123649-27123727,27123813-27123883,
           27123958-27124047
          Length = 452

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 200 YVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQI 254
           Y+ A    L   V P IR+  SK +  +E+G+A   +S + +  +I A +++T +
Sbjct: 344 YLSAVFIILSAFVHPSIRTNVSKSVGSNEQGIAQGCISGISSFASILAPLIFTPL 398


>11_04_0291 -
           15851647-15852252,15853995-15854136,15854666-15854881,
           15854957-15855052,15855147-15855259,15856516-15856727,
           15856842-15856939,15857066-15857186,15857291-15857508,
           15857657-15857837,15857919-15858207,15858303-15858367,
           15858480-15858591
          Length = 822

 Score = 31.5 bits (68), Expect = 0.79
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 4/75 (5%)

Query: 194 TVGKMMYVGATAAALGPIVAPLIRSITSKLLPPDE-RGVAYAFLSVMENAVAIFASIVYT 252
           T+G+ M V   + ALGPIV P+   +  + LP +  R   Y  L  + +AV    + V T
Sbjct: 644 TMGEYMSVAEPSFALGPIV-PVSAYLLGEELPEEAVRSPEYGRLLGLASAVGRLLNDVMT 702

Query: 253 QIYNATIGTEYINSI 267
             Y   +GT  +NS+
Sbjct: 703 --YEKEMGTGKLNSV 715


>03_03_0264 - 15996707-15996919,15997002-15997139
          Length = 116

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 169 VTYLSTLPMGIAIAHITGHLVYAHTTVGKMMYVGATAAALGPIVAPLI 216
           +T LST+  G   A  TG +VY  TT   +  +G TA  +G +  P++
Sbjct: 56  ITTLSTVGYGDMHAENTGEMVY--TTAYMLFNLGLTAYIIGNMTNPVV 101


>09_06_0188 - 21441377-21442201
          Length = 274

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 2/74 (2%)

Query: 122 PVEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLR--VGILDVTYLSTLPMGI 179
           P +  +Y + L  ALT +DL      F  +A V+ +K+R  R   G+  V ++       
Sbjct: 67  PSKSTVYVSNLDFALTNSDLHTLFSRFGRVARVTVLKDRDSRRSRGVAFVLFVRREDAAA 126

Query: 180 AIAHITGHLVYAHT 193
           A A + G ++   T
Sbjct: 127 AAAEMHGKVLNGRT 140


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,055,178
Number of Sequences: 37544
Number of extensions: 266654
Number of successful extensions: 826
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 824
Number of HSP's gapped (non-prelim): 6
length of query: 283
length of database: 14,793,348
effective HSP length: 81
effective length of query: 202
effective length of database: 11,752,284
effective search space: 2373961368
effective search space used: 2373961368
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)