GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000671-TA|BGIBMGA000671-PA|undefined
         (283 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical ...    43   3e-04
AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical ...    42   4e-04
Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical p...    40   0.002
AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical ...    34   0.099
Z70782-10|CAA94848.1|  487|Caenorhabditis elegans Hypothetical p...    30   1.6  
Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z82086-8|CAB04999.1|  330|Caenorhabditis elegans Hypothetical pr...    29   3.7  
AL021497-22|CAA16412.1|  330|Caenorhabditis elegans Hypothetical...    29   3.7  
AF067943-9|AAC17667.1|  348|Caenorhabditis elegans Seven tm rece...    29   3.7  

>AF125971-1|AAD14769.2|  469|Caenorhabditis elegans Hypothetical
           protein Y4C6B.5 protein.
          Length = 469

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 32/162 (19%), Positives = 67/162 (41%), Gaps = 1/162 (0%)

Query: 3   WYKYITVEPTMFFYMMAYMITNVIEQTFYVFQTCHINHGYSTEICYNISKHADINKEVQV 62
           + + + +E  +F YM+   +   + Q     + C I +  +   C N+S + D +K++Q 
Sbjct: 4   YLRMLGMEIPLFLYMLGSYLNYPVFQNLIYEKECLIKYQQNETFCRNVSAYYD-DKDIQA 62

Query: 63  TVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLYFSIMITVNTMNDWP 122
             + F+  + +      L     LG+ +D    KI L+   +G +  +I     +     
Sbjct: 63  AANHFYFISSLTLLCPSLVTTLLLGAATDYWSIKIPLIIPYIGCILGTINYVFQSYFIHT 122

Query: 123 VEYVIYTAALPSALTGADLAIFAGCFAYIADVSSVKNRTLRV 164
             Y +  +     L G  +AI +    Y    S ++ R+ R+
Sbjct: 123 SVYFLLISDALFGLCGGFIAIISTTLTYGVKTSMLRYRSYRI 164



 Score = 31.9 bits (69), Expect = 0.53
 Identities = 15/62 (24%), Positives = 29/62 (46%)

Query: 198 MMYVGATAAALGPIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIYNA 257
           M Y  A        V+   R+  S L+   E+G  ++ +S++E    + A+ +Y  +Y  
Sbjct: 349 MAYSIAVIVMFNRFVSTGFRAFISSLIDMQEQGKIFSVISLLEGITTLVATSIYNNVYPN 408

Query: 258 TI 259
           T+
Sbjct: 409 TL 410


>AC006619-2|AAK68254.1|  434|Caenorhabditis elegans Hypothetical
           protein C46C11.2 protein.
          Length = 434

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 8/90 (8%)

Query: 70  WNGIASHV-VPLFLAFFL--GSYSDKRGRKIVLLAGLLGKLYFSIM--ITVNTMNDWPVE 124
           W+    ++ +P+   F +  G YSD RGRK  +L G+L  L  + M  +  +   DWP+ 
Sbjct: 27  WDNYYEYINLPIACVFGIIYGGYSDHRGRKYPMLIGILSVLVSNAMNILMWDENTDWPLA 86

Query: 125 YVIYTAALPSALTGADLAIFAGCF-AYIAD 153
           +   TA +   L   D  +   C  AYIAD
Sbjct: 87  WTYPTAVVTGVL--GDFLLTMSCINAYIAD 114



 Score = 34.7 bits (76), Expect = 0.075
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 171 YLSTLPMGIAIAHITGH-LVYAHTTVGKMMYVGATAAALGPIVAPLIRSITSKLLPPDER 229
           +  T  + +AI  +TG  L+        +++      +L  ++ P+  +  + ++  DE 
Sbjct: 284 FRDTFIICLAILSMTGCVLMIGLAQASWLIFASLAPGSLHGLLNPMSYTFIACIVEQDEI 343

Query: 230 GVAYAFLSVMENAVAIFASIVYTQIYNATI 259
           G AYA  SV +    I  S+V   IY AT+
Sbjct: 344 GKAYAISSVAQKLAGIAQSLVLQNIYIATV 373


>Z70753-12|CAA94761.2|  585|Caenorhabditis elegans Hypothetical
           protein F40F9.5 protein.
          Length = 585

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 38/161 (23%), Positives = 67/161 (41%), Gaps = 10/161 (6%)

Query: 3   WYKYITVEPTMFFYMMAY--MITNVIEQTFY-----VFQTCHINHGYSTEICYNI-SKHA 54
           W   + VEP +F  M  +  M TN    T++     + QT       +T  C +I S + 
Sbjct: 56  WCCPVNVEPILFLVMCGFGLMTTNNSLFTYWARCVQIAQTHRELADNATYTCASIASSNG 115

Query: 55  DINKEVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGLLGKLY--FSIM 112
            +  +V+  ++    +  I   +  L ++  +G++SD+ GRK  LL  L G     F ++
Sbjct: 116 TLQDDVEKDIANTKIYLQIMGTIPTLIVSPLIGNWSDRNGRKSPLLFSLFGLFINNFILL 175

Query: 113 ITVNTMNDWPVEYVIYTAALPSALTGADLAIFAGCFAYIAD 153
               T     V Y  + +     + G   A F+   A + D
Sbjct: 176 CATLTYETVNVYYWFFISEFMLGMFGGGAATFSTSLAIVTD 216


>AF016679-5|AAB66157.1|  485|Caenorhabditis elegans Hypothetical
           protein T28C12.2 protein.
          Length = 485

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 172 LSTLPMGIAIAHITGHLVYAH-----TTVGKMMYVGATAAALG---PIVAPLIRSITSKL 223
           L+ LP G+    + G LV  H     T V   +Y+       G   P V     ++ S++
Sbjct: 348 LNFLPPGVETTEVGGCLVEYHWCQETTRVPLSVYLFCFIVFFGVAFPFVETPSAALYSEV 407

Query: 224 LPPDERGVAYAFLSVMENAVAIFASIVYTQIYNATIGTEYI---NSIFYFTISTQVIVFL 280
           L P ++G    F S+  +   + ASI  T I+  T G  Y+    S+F    +  +++F 
Sbjct: 408 LGPRKQGTMQGFFSLGGSIAPVIASISSTAIFKYT-GYRYVIVLQSVFLLVGAALILIFY 466

Query: 281 SAL 283
             L
Sbjct: 467 KRL 469


>Z70782-10|CAA94848.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 210 PIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIY 255
           P +     ++ SKLL PD +G   +   +      IFA I  T IY
Sbjct: 383 PFINVANATLYSKLLNPDSQGTQQSLYDISNTTARIFAPIFITLIY 428


>Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/46 (32%), Positives = 21/46 (45%)

Query: 210 PIVAPLIRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIY 255
           P +     ++ SKLL PD +G   +   +      IFA I  T IY
Sbjct: 383 PFINVANATLYSKLLNPDSQGTQQSLYDISNTTARIFAPIFITLIY 428


>U39997-8|AAA81100.1|  718|Caenorhabditis elegans Hypothetical
           protein F56D1.2 protein.
          Length = 718

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 21/97 (21%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 44  TEICYNISKHADINKEVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLAGL 103
           T   +N+      N    ++ +  H+WN  AS ++  F+     ++ + R +    LA L
Sbjct: 563 TAFLHNVEHTERANVTQNISEAQIHEWNLCASRMMSFFVR--NPNWLETRWKPKDELAAL 620

Query: 104 LGKLYFSIMITVNTMNDWPVEYVIYTAALPSALTGAD 140
             K    +++ + T  D     + Y    P AL  +D
Sbjct: 621 HLKRQSPVIVPIQTEEDRIAASIKYNLVPPQALVDSD 657


>Z82086-8|CAB04999.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK228.8 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 2   PWYKYITVEPTMFFYMMAYMITNVIEQTFYVFQTC--HINHGYSTEICYN-ISKHADINK 58
           P Y  + V+ T+  Y +A+M+T V+ Q F+       H+ H  +     N + KH  +  
Sbjct: 186 PGYFVLAVDNTIPKYCIAFMLTLVMSQVFFYVGAIFWHLFHTVAQSQATNRLQKHFFLAI 245

Query: 59  EVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLA 101
            VQV +        I   V+ + LA + G Y ++    I LLA
Sbjct: 246 CVQVFIPILL----ITFPVLYIVLAIWFG-YYNQAATNIALLA 283


>AL021497-22|CAA16412.1|  330|Caenorhabditis elegans Hypothetical
           protein ZK228.8 protein.
          Length = 330

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 2   PWYKYITVEPTMFFYMMAYMITNVIEQTFYVFQTC--HINHGYSTEICYN-ISKHADINK 58
           P Y  + V+ T+  Y +A+M+T V+ Q F+       H+ H  +     N + KH  +  
Sbjct: 186 PGYFVLAVDNTIPKYCIAFMLTLVMSQVFFYVGAIFWHLFHTVAQSQATNRLQKHFFLAI 245

Query: 59  EVQVTVSTFHQWNGIASHVVPLFLAFFLGSYSDKRGRKIVLLA 101
            VQV +        I   V+ + LA + G Y ++    I LLA
Sbjct: 246 CVQVFIPILL----ITFPVLYIVLAIWFG-YYNQAATNIALLA 283


>AF067943-9|AAC17667.1|  348|Caenorhabditis elegans Seven tm
           receptor protein 114 protein.
          Length = 348

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)

Query: 216 IRSITSKLLPPDERGVAYAFLSVMENAVAIFASIVYTQIYNATIGTEYINSIFYFTIST 274
           I S    L P D   V YAF     N   I    +   I++  + T  I+++FYF I T
Sbjct: 168 ILSTCYNLTPDDVGHVPYAFYKTQGNTRVIRWDNMIGVIHHMIVMTISISAVFYFGIKT 226


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.138    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,149,969
Number of Sequences: 27539
Number of extensions: 237673
Number of successful extensions: 784
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 12
length of query: 283
length of database: 12,573,161
effective HSP length: 81
effective length of query: 202
effective length of database: 10,342,502
effective search space: 2089185404
effective search space used: 2089185404
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 59 (27.9 bits)