Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
         (302 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    30   0.36 
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    26   7.6  

>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 30.3 bits (65), Expect = 0.36
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 153  YQEFTTSRIPGTIGSETSHMCPLLSPQVGTLNPLSPFKIPLFSTSLHYPVTHP 205
            YQ+   +R PG     TSH    +S  +G  N  S F     + +L +  THP
Sbjct: 1866 YQKLV-ARAPGADVLSTSHFATSMSRDLGKANGKSNFLSSKLANALSFSTTHP 1917


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 140 DPNVHNSFLERTPYQEFTTSRIPGTIGSETSHMCPLLSPQVGTLNPLSPFKIPL 193
           +P+ +N+ ++ +  Q  T   +P    S +S   P  +PQ+G +   SP + PL
Sbjct: 221 NPSDNNTTMKSSLNQALTLINLPEQPFSISS---PTATPQLGVVKRTSPLRFPL 271


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,370,106
Number of Sequences: 5004
Number of extensions: 54001
Number of successful extensions: 105
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 3
length of query: 302
length of database: 2,362,478
effective HSP length: 72
effective length of query: 230
effective length of database: 2,002,190
effective search space: 460503700
effective search space used: 460503700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)