Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
(302 letters)
Database: tribolium
317 sequences; 114,650 total letters
Searching....................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 127 1e-31
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 127 1e-31
AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle nu... 121 6e-30
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 95 4e-22
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 77 2e-16
EF222298-1|ABN79658.1| 120|Tribolium castaneum ion transport pe... 27 0.17
EF222299-1|ABN79659.1| 136|Tribolium castaneum ion transport pe... 24 1.6
EF222297-1|ABN79657.1| 140|Tribolium castaneum ion transport pe... 24 1.6
X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein. 22 6.4
AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein. 22 6.4
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 21 8.5
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 21 8.5
AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein ... 21 8.5
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 127 bits (306), Expect = 1e-31
Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 2/90 (2%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVC--KESGRCIVDVTRRNQCQACRF 69
C+VCGD +SGKHY + +CDGC GFFKRSIRRN YVC K+ G CI+D T RNQC+ACR
Sbjct: 38 CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRL 97
Query: 70 SKCLRVNMKKEAVQHERAPRPAVTIQHQLA 99
KC V M K+AVQHER PR + + Q++
Sbjct: 98 KKCQNVGMNKDAVQHERGPRNSTLRRQQMS 127
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 127 bits (306), Expect = 1e-31
Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 2/90 (2%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVC--KESGRCIVDVTRRNQCQACRF 69
C+VCGD +SGKHY + +CDGC GFFKRSIRRN YVC K+ G CI+D T RNQC+ACR
Sbjct: 38 CKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSCIIDKTHRNQCRACRL 97
Query: 70 SKCLRVNMKKEAVQHERAPRPAVTIQHQLA 99
KC V M K+AVQHER PR + + Q++
Sbjct: 98 KKCQNVGMNKDAVQHERGPRNSTLRRQQMS 127
>AM295014-1|CAL25729.1| 407|Tribolium castaneum ultraspiracle
nuclear receptor protein.
Length = 407
Score = 121 bits (292), Expect = 6e-30
Identities = 46/75 (61%), Positives = 61/75 (81%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C +CGD+ASGKHYGV SC+GC+GFFKR++R++L Y C+E CI+D +RN+CQ CR+ K
Sbjct: 86 CSICGDRASGKHYGVYSCEGCKGFFKRTVRKDLSYACREEKNCIIDKRQRNRCQYCRYQK 145
Query: 72 CLRVNMKKEAVQHER 86
CL + MK+EAVQ ER
Sbjct: 146 CLNMGMKREAVQEER 160
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 95.5 bits (227), Expect = 4e-22
Identities = 39/77 (50%), Positives = 49/77 (63%)
Query: 9 EAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACR 68
E C VCGD+ASG HY +C+GC+GFF+RSI +N Y CK C +D+ R +CQ CR
Sbjct: 185 EELCLVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRRKCQECR 244
Query: 69 FSKCLRVNMKKEAVQHE 85
KCL V M+ E V E
Sbjct: 245 LKKCLSVGMRPECVVPE 261
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 76.6 bits (180), Expect = 2e-16
Identities = 31/77 (40%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYV--CKESGRCIVDVTRRNQCQACRF 69
C+VCG+ A+G H+G +C+GC+ FF R+ N+ + CK +G C+++ R C+ACR
Sbjct: 5 CKVCGEPAAGFHFGAFTCEGCKSFFGRTYN-NISSISECKNNGECVINKKNRTACKACRL 63
Query: 70 SKCLRVNMKKEAVQHER 86
KCL V M K ++ R
Sbjct: 64 RKCLLVGMSKSGSRYGR 80
>EF222298-1|ABN79658.1| 120|Tribolium castaneum ion transport
peptide isoform B protein.
Length = 120
Score = 27.1 bits (57), Expect = 0.17
Identities = 14/58 (24%), Positives = 26/58 (44%)
Query: 32 CRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSKCLRVNMKKEAVQHERAPR 89
C+G + +SI LD +C++ + N C++ FS V + + E P+
Sbjct: 53 CKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCRSECFSTKYFVGCVESLLLSEEMPK 110
>EF222299-1|ABN79659.1| 136|Tribolium castaneum ion transport
peptide isoform C protein.
Length = 136
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 32 CRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQ 65
C+G + +SI LD +C++ + N C+
Sbjct: 53 CKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCR 86
>EF222297-1|ABN79657.1| 140|Tribolium castaneum ion transport
peptide isoform A protein.
Length = 140
Score = 23.8 bits (49), Expect = 1.6
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 32 CRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQ 65
C+G + +SI LD +C++ + N C+
Sbjct: 53 CKGVYDKSIFAKLDSICEDCYMLFREPQLHNLCR 86
>X97819-1|CAA66399.1| 251|Tribolium castaneum ZEN Tc protein.
Length = 251
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 239 SYHFINIIKYVEFYKNNFMSRLNKFPESNMLHKQISATP 277
SY+F+ E+Y+NN +P S+ Q +A P
Sbjct: 23 SYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPP 61
>AF321227-4|AAK16424.1| 246|Tribolium castaneum Zen protein.
Length = 246
Score = 21.8 bits (44), Expect = 6.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 239 SYHFINIIKYVEFYKNNFMSRLNKFPESNMLHKQISATP 277
SY+F+ E+Y+NN +P S+ Q +A P
Sbjct: 14 SYNFLQEKTTYEYYENNQALPPITYPPSDWNCPQYNAPP 52
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 21.4 bits (43), Expect = 8.5
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 155 EFTTS-RIPGTIGSETSHMCPLLSPQVGTLNPLSPFKIPLFSTSL 198
EFT S ++ T + LL P VGT+ I STS+
Sbjct: 261 EFTLSGQVMKYAALATENFSSLLEPAVGTMTGAGGTAIVSISTSV 305
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 21.4 bits (43), Expect = 8.5
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 183 LNPLSPFKIPLFSTSLHYPVTH 204
+ L P +P STS + P+TH
Sbjct: 319 MTELYPSPVPGHSTSPNLPLTH 340
>AF236856-1|AAG17563.2| 370|Tribolium castaneum Kruppel protein
protein.
Length = 370
Score = 21.4 bits (43), Expect = 8.5
Identities = 7/10 (70%), Positives = 8/10 (80%)
Query: 29 CDGCRGFFKR 38
CD CRG F+R
Sbjct: 249 CDKCRGRFRR 258
Database: tribolium
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 114,650
Number of sequences in database: 317
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,997
Number of Sequences: 317
Number of extensions: 2882
Number of successful extensions: 16
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 13
length of query: 302
length of database: 114,650
effective HSP length: 56
effective length of query: 246
effective length of database: 96,898
effective search space: 23836908
effective search space used: 23836908
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 43 (21.4 bits)
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