GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
         (302 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1116 + 8839946-8840048,8840142-8842064,8842192-8842307,884...    28   8.0  

>01_01_1116 +
           8839946-8840048,8840142-8842064,8842192-8842307,
           8843340-8843763,8845187-8845452
          Length = 943

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 4/47 (8%)

Query: 251 FYKNNFMSRLNKFPESNM---LHKQISATPINMKSPKHYVLLKVGTD 294
           +YK+ F+S+L   PE N      K IS  P  + + KH  L+  G D
Sbjct: 679 WYKDTFLSKLYTLPEPNQDFWKEKYISGLP-PLFAEKHITLIDSGAD 724


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,491,990
Number of Sequences: 37544
Number of extensions: 322761
Number of successful extensions: 513
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 1
length of query: 302
length of database: 14,793,348
effective HSP length: 82
effective length of query: 220
effective length of database: 11,714,740
effective search space: 2577242800
effective search space used: 2577242800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)