Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
(302 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42) 124 1e-28
SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.) 118 8e-27
SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0) 117 1e-26
SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.) 115 5e-26
SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.) 113 2e-25
SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.) 109 4e-24
SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41) 108 5e-24
SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0) 108 5e-24
SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23) 108 6e-24
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0) 103 1e-22
SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38) 103 2e-22
SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39) 100 1e-21
SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40) 98 7e-21
SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37) 96 4e-20
SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44) 92 6e-19
SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0) 78 8e-15
SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.29
SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2) 31 1.5
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11) 30 2.0
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1) 29 3.5
SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.2
SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041) 28 8.2
>SB_30131| Best HMM Match : zf-C4 (HMM E-Value=8.39938e-42)
Length = 311
Score = 124 bits (298), Expect = 1e-28
Identities = 52/82 (63%), Positives = 61/82 (74%)
Query: 7 KPEAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQA 66
K E C+VCGD +SG+HYGV +CDGC GFF RS+RR++ Y CK +G C VD RRNQCQA
Sbjct: 30 KQEILCKVCGDISSGRHYGVYTCDGCSGFFMRSVRRDMVYTCKGNGGCTVDKKRRNQCQA 89
Query: 67 CRFSKCLRVNMKKEAVQHERAP 88
CRF KCL V M + AVQ ER P
Sbjct: 90 CRFKKCLEVKMNRFAVQQERQP 111
>SB_14472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 603
Score = 118 bits (283), Expect = 8e-27
Identities = 49/85 (57%), Positives = 60/85 (70%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VCGDK+SGKHYGV +C+GC+ FFKRS+RRNL Y C+ S C +D RNQCQ CR K
Sbjct: 243 CAVCGDKSSGKHYGVFTCEGCKSFFKRSVRRNLTYTCRASRDCPIDQHHRNQCQYCRLKK 302
Query: 72 CLRVNMKKEAVQHERAPRPAVTIQH 96
CL+V M++EAVQ R P Q+
Sbjct: 303 CLKVGMRREAVQRGRIPAAQTPTQN 327
>SB_58028| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 438
Score = 117 bits (282), Expect = 1e-26
Identities = 49/77 (63%), Positives = 58/77 (75%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VCGDK+SGKHYGV +C+GC+ FFKRSIRR+L Y C+ C VD+ RNQCQ CR K
Sbjct: 79 CAVCGDKSSGKHYGVYTCEGCKSFFKRSIRRSLSYSCRGVRNCPVDIQNRNQCQYCRLKK 138
Query: 72 CLRVNMKKEAVQHERAP 88
CL+V M+KEAVQ R P
Sbjct: 139 CLKVGMRKEAVQKGRIP 155
>SB_12318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 420
Score = 115 bits (276), Expect = 5e-26
Identities = 55/85 (64%), Positives = 61/85 (71%), Gaps = 14/85 (16%)
Query: 7 KPEAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQA 66
KP CRVCGD++SGKHYGV +CDGCRGFFKRSIRRNL Y CKE G+C+VDV RRNQC A
Sbjct: 18 KPLVLCRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCPA 77
Query: 67 CRFSKCLRVNMKKEAVQHERAPRPA 91
+VQHERAPR A
Sbjct: 78 --------------SVQHERAPRSA 88
>SB_58064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1027
Score = 113 bits (272), Expect = 2e-25
Identities = 47/77 (61%), Positives = 57/77 (74%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VC D+ASG+HYGV +C+GC+GFFKRS+RRN+ Y C CIVD RN+CQ CR K
Sbjct: 737 CLVCNDRASGRHYGVMTCEGCKGFFKRSVRRNMVYHCMFRETCIVDKVLRNRCQKCRMDK 796
Query: 72 CLRVNMKKEAVQHERAP 88
CL V M+K AVQ+ER P
Sbjct: 797 CLAVGMQKSAVQYERRP 813
>SB_12110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 109 bits (261), Expect = 4e-24
Identities = 45/96 (46%), Positives = 64/96 (66%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C +CGD++SG HYGV SC+GC+ FFKR++++ L Y C ES C +D R +CQ CRF K
Sbjct: 14 CAICGDRSSGFHYGVQSCEGCKSFFKRTVQKQLQYACVESKSCQIDKNNRIRCQYCRFQK 73
Query: 72 CLRVNMKKEAVQHERAPRPAVTIQHQLALQKLGYSF 107
CL + M KEAV+ +RAP I+ + L++ +F
Sbjct: 74 CLALGMLKEAVREDRAPGGRPRIKSLIGLKENAETF 109
>SB_20447| Best HMM Match : zf-C4 (HMM E-Value=2.09999e-41)
Length = 419
Score = 108 bits (260), Expect = 5e-24
Identities = 41/69 (59%), Positives = 52/69 (75%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C+VCGD +GKHYGV +C+GC+GFFKR++R+NL Y C+ S C +D RN+CQ CRF K
Sbjct: 42 CKVCGDNGTGKHYGVVACEGCKGFFKRTVRKNLIYTCRGSNDCFIDKVHRNRCQKCRFVK 101
Query: 72 CLRVNMKKE 80
CL MKKE
Sbjct: 102 CLTAGMKKE 110
>SB_58027| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 396
Score = 108 bits (260), Expect = 5e-24
Identities = 41/77 (53%), Positives = 55/77 (71%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VCGDK++GKHYGV +C+GC+ FFKR++R N +Y C+ C +D R++C +CRF K
Sbjct: 57 CAVCGDKSTGKHYGVSTCEGCKSFFKRTVRNNTNYTCRGQNTCAIDRNSRSRCPSCRFQK 116
Query: 72 CLRVNMKKEAVQHERAP 88
CL MKKEAVQ + P
Sbjct: 117 CLSTGMKKEAVQTTKLP 133
>SB_32228| Best HMM Match : zf-C4 (HMM E-Value=6.2e-23)
Length = 300
Score = 108 bits (259), Expect = 6e-24
Identities = 44/62 (70%), Positives = 50/62 (80%)
Query: 28 SCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSKCLRVNMKKEAVQHERA 87
+CDGCRGFFKRS+RRNL Y CKE C +DV RRNQCQACR KC +NM ++AVQHERA
Sbjct: 2 TCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRDAVQHERA 61
Query: 88 PR 89
PR
Sbjct: 62 PR 63
>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
Length = 553
Score = 103 bits (248), Expect = 1e-22
Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGR-CIVDVTRRNQCQACRFS 70
C +C DKA+G+HYGV SC+GC+GFFKRS++ DY C+ + C +D RN+CQ CRF
Sbjct: 198 CAICLDKATGQHYGVTSCEGCKGFFKRSVQNKKDYTCRNLTKDCPIDKRHRNRCQYCRFQ 257
Query: 71 KCLRVNMKKEAVQHERAP 88
KC++ M KEAV+ +R P
Sbjct: 258 KCIQAGMIKEAVREDRTP 275
>SB_9970| Best HMM Match : zf-C4 (HMM E-Value=9.4e-38)
Length = 259
Score = 103 bits (247), Expect = 2e-22
Identities = 42/72 (58%), Positives = 53/72 (73%), Gaps = 3/72 (4%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKES---GRCIVDVTRRNQCQACR 68
C+VCGD++SGKHYG+ +CDGC GFFKRSIRRN Y C+ + G C VD RNQC++CR
Sbjct: 8 CKVCGDRSSGKHYGIYACDGCSGFFKRSIRRNRSYTCRATNGKGNCPVDKIHRNQCRSCR 67
Query: 69 FSKCLRVNMKKE 80
KC V+M K+
Sbjct: 68 LKKCFDVSMNKD 79
>SB_4250| Best HMM Match : zf-C4 (HMM E-Value=2.3e-39)
Length = 79
Score = 100 bits (240), Expect = 1e-21
Identities = 37/69 (53%), Positives = 50/69 (72%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C +C D+A+GKHYG SCDGC+GFF+RS+R+N Y C+ C+++ +RNQC+ CR K
Sbjct: 10 CLICADRATGKHYGASSCDGCKGFFRRSVRKNHVYSCRFQRNCVINKDKRNQCRFCRLRK 69
Query: 72 CLRVNMKKE 80
C R MKKE
Sbjct: 70 CFRAGMKKE 78
>SB_10105| Best HMM Match : zf-C4 (HMM E-Value=3.60001e-40)
Length = 370
Score = 98.3 bits (234), Expect = 7e-21
Identities = 39/75 (52%), Positives = 52/75 (69%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VC +SG+HYGV +C+GC+ FF R++R L Y+C+ SG C VD R QCQACRF K
Sbjct: 22 CAVCSAPSSGRHYGVFTCEGCKCFFNRTVRYKLTYICEGSGSCRVDKQNRTQCQACRFKK 81
Query: 72 CLRVNMKKEAVQHER 86
C V M++EA++ R
Sbjct: 82 CATVGMRREAIRRGR 96
>SB_51757| Best HMM Match : Hormone_recep (HMM E-Value=6.4e-37)
Length = 405
Score = 95.9 bits (228), Expect = 4e-20
Identities = 39/67 (58%), Positives = 48/67 (71%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VCGD+++GKHYGV +CDGC GFFKR+ RR +VCK C V T RN+C+ACR K
Sbjct: 24 CVVCGDQSTGKHYGVFACDGCSGFFKRTSRRLEPWVCKAQNACSVKTTSRNECKACRMKK 83
Query: 72 CLRVNMK 78
C+ V MK
Sbjct: 84 CVEVGMK 90
>SB_18088| Best HMM Match : zf-C4 (HMM E-Value=7.56701e-44)
Length = 1220
Score = 91.9 bits (218), Expect = 6e-19
Identities = 34/71 (47%), Positives = 52/71 (73%)
Query: 12 CRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSK 71
C VC DKA+G HYGV +C+GC+GFFKR++++ L+Y C+ + C ++ RN+CQ CRF K
Sbjct: 823 CVVCNDKATGYHYGVFTCEGCKGFFKRTVQKQLEYTCRGNQDCDINQHTRNRCQYCRFEK 882
Query: 72 CLRVNMKKEAV 82
C++ M K+ +
Sbjct: 883 CVKSGMLKQGM 893
>SB_36879| Best HMM Match : Hormone_recep (HMM E-Value=0)
Length = 358
Score = 78.2 bits (184), Expect = 8e-15
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 9 EAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL--DYVCKES--GRCIVDVTRRNQC 64
E C VCGD++SG HYG +C+GC+ FFKR+++R L Y C S +C +D R +C
Sbjct: 4 EEKCAVCGDESSGYHYGAYTCEGCKSFFKRTVQRGLVKKYSCVRSNQNQCPMDKNSRAKC 63
Query: 65 QACRFSKCLRVNMKKEAVQHER 86
QACR +C M V+ E+
Sbjct: 64 QACRLQRCFDAGMVLNGVRKEK 85
>SB_33135| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 364
Score = 46.0 bits (104), Expect = 4e-05
Identities = 21/36 (58%), Positives = 23/36 (63%)
Query: 52 GRCIVDVTRRNQCQACRFSKCLRVNMKKEAVQHERA 87
G C V+ RN CQ CR KCL V MK+EAVQ RA
Sbjct: 64 GCCPVNKRYRNSCQFCRMRKCLAVGMKREAVQQARA 99
>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 33.1 bits (72), Expect = 0.29
Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 136 PTLADPNVHNSFLERTPYQEFTTSRIPGTIGSETSHMCPLLSPQVGTLNP--LSPFKIPL 193
P+ P +H L TPY + S +P S S PLL P + P + +P
Sbjct: 52 PSQYHPLLHPVHLSTTPYYIQSIS-VPPLTTSSPSQYHPLLHPVHLSTIPYYIQSISVPP 110
Query: 194 FSTSL---HYPVTHPGYLSTNIFY 214
+TS ++P+ HP +LST +Y
Sbjct: 111 LTTSSPSQYHPLLHPVHLSTIPYY 134
Score = 31.1 bits (67), Expect = 1.2
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 136 PTLADPNVHNSFLERTPYQEFTTSRIPGTIGSETSHMCPLLSP-----QVGTLNPLSPFK 190
P+ P +H L PY + S +P S S PL P + + +S
Sbjct: 116 PSQYHPLLHPVHLSTIPYYIQSIS-VPSLTTSSPSQYHPLPHPVHLRTTLFYIQSISEPP 174
Query: 191 IPLFSTSLHYPVTHPGYLSTNIFY 214
+ FS S ++P+ HP +LS ++Y
Sbjct: 175 LTTFSPSQNHPLLHPVHLSITLYY 198
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 136 PTLADPNVHNSFLERTPYQEFTTSRIPGTIGSETSHMCPLLSPQVGTLNP--LSPFKIPL 193
P+ P +H L T Y + S P T S + + PLL P + P + +P
Sbjct: 20 PSQNHPLLHPVHLSTTLYYIQSISEPPLTTSSPSQYH-PLLHPVHLSTTPYYIQSISVPP 78
Query: 194 FSTSL---HYPVTHPGYLSTNIFY 214
+TS ++P+ HP +LST +Y
Sbjct: 79 LTTSSPSQYHPLLHPVHLSTIPYY 102
>SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
Length = 298
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
Query: 136 PTLADPNVHNSFLERTPYQEFTTSRIPGTIGSETSHMCPLLSPQV--GTLNPLSPFKIPL 193
P+ P +H L T Y + S P T S + + PLL P TL + +P
Sbjct: 179 PSQNHPLLHPVHLSITLYYIQSISVPPPTTSSPSQNH-PLLHPVHLRSTLYYIQSISVPP 237
Query: 194 FSTSL---HYPVTHPGYLSTNIFY 214
+TS ++P+ HP +L T ++Y
Sbjct: 238 LTTSSPSQYHPLLHPVHLRTTLYY 261
>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
Length = 1692
Score = 30.3 bits (65), Expect = 2.0
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
Query: 152 PYQEFTTSRIPGTIGSETSHMCPLLSPQVGTLNPLSPFKIPLFSTS-LHYPVTHPGYLST 210
P+ F T+ IP + ++S +L+P + N P IP +S++ YP PGY S
Sbjct: 310 PHSSFPTTGIP--VIPQSS----VLTPGYPSANTGYPTAIPGYSSANTGYPTAIPGYPSA 363
Query: 211 NIFYP 215
N YP
Sbjct: 364 NTGYP 368
>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
Length = 678
Score = 29.5 bits (63), Expect = 3.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 130 SYSGIVPTLADPNVHNSFLERTPYQEFT--TSRIPGTIGSETSHMC 173
SY VPTL V N+ +E +P T +S + SE SH+C
Sbjct: 144 SYKTKVPTLVYSRVENTSVESSPLSTATPQSSGYKNGVTSEPSHLC 189
>SB_17501| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 819
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 1 MEIGNCKPEAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKES 51
+ + + K FC CG G CDGC G F + + C +S
Sbjct: 103 LAVHSYKSPTFCDFCGQMLYGLVRQGLKCDGCGGNFHKRCAYRIRNNCSDS 153
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/58 (24%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 35 FFKRSIRRNLDYVCKESGRCIVDVTRRNQCQACRFSKCLRVNMKKEAVQHERAPRPAV 92
F K ++ + DY C+E ++D T+ FS +R ++ + + + P P V
Sbjct: 614 FIKEFVKVSSDYCCREDLLTLLDRTKHQLIPKIEFSNYMR-SVNLQTISFKLCPGPVV 670
>SB_19371| Best HMM Match : C_tripleX (HMM E-Value=0.041)
Length = 942
Score = 28.3 bits (60), Expect = 8.2
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 5 NCKPEAFCRVCGDKASGKH-YGV--PSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRR 61
+CK E C GK YG +C+ + + + R N CKE G+C+ +
Sbjct: 360 SCKQECKTAKCALTCKGKGTYGSCDQTCERGKCQLRCNTRENCKQTCKE-GKCLTMSCKA 418
Query: 62 NQC-QACRFSKC 72
C Q C ++C
Sbjct: 419 KNCDQECPGNQC 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.322 0.136 0.431
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,130,401
Number of Sequences: 59808
Number of extensions: 392872
Number of successful extensions: 689
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 657
Number of HSP's gapped (non-prelim): 35
length of query: 302
length of database: 16,821,457
effective HSP length: 82
effective length of query: 220
effective length of database: 11,917,201
effective search space: 2621784220
effective search space used: 2621784220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 60 (28.3 bits)
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