GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
         (302 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   6.1  
DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.       23   8.0  
AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.           23   8.0  

>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 247  KYVEFYKNNFMSRLNKFPESNMLHKQISATPINMKSPKHYVL 288
            KY E +++ F   + KF + N++     A P+    P HY L
Sbjct: 1063 KYFEDFEDGFAYNMTKFYQQNVV---TMAFPLATGLPFHYSL 1101


>DQ974169-1|ABJ52809.1|  508|Anopheles gambiae serpin 11 protein.
          Length = 508

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 260 LNKFPESNMLHKQISATPINMKSPKHYVLLKVGTDGRTRRDRS 302
           LNKFP++      +S  P    S     L K   +G TR D S
Sbjct: 292 LNKFPKTERGAFYVSGQPPVRSSVNMMFLTKELRNGNTRTDDS 334


>AF444781-1|AAL37902.1| 1459|Anopheles gambiae Toll6 protein.
          Length = 1459

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 232 NKWRQWTSYHFINIIKYVEFYKNNFMSRLNKFPESNMLHKQ 272
           NK   +   H    +++++ ++N      N++   N LH Q
Sbjct: 592 NKLEHFDYSHIPTHLQWLDLHRNELTELTNRYGLDNQLHLQ 632


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 311,896
Number of Sequences: 2123
Number of extensions: 12121
Number of successful extensions: 34
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 3
length of query: 302
length of database: 516,269
effective HSP length: 64
effective length of query: 238
effective length of database: 380,397
effective search space: 90534486
effective search space used: 90534486
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 48 (23.4 bits)