GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000670-TA|BGIBMGA000670-PA|IPR001628|Nuclear hormone
receptor, DNA-binding, IPR000324|Vitamin D receptor
         (302 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26550.1 68416.m03314 DC1 domain-containing protein contains ...    31   1.3  
At1g54430.1 68414.m06209 hypothetical protein                          31   1.3  
At1g61380.1 68414.m06917 S-locus protein kinase, putative simila...    30   1.7  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    30   2.2  
At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger) fa...    30   2.2  
At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger) fa...    30   2.2  
At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger) fa...    29   3.8  
At3g21160.1 68416.m02673 mannosyl-oligosaccharide 1,2-alpha-mann...    29   5.1  
At2g23210.1 68415.m02772 UDP-glucoronosyl/UDP-glucosyl transfera...    28   8.8  

>At3g26550.1 68416.m03314 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 681

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 7/80 (8%)

Query: 2   EIGNCKPEAFCRVCGDKASGKHYGVPSCDGCRGFFK----RSIRRNLDYVCKESGRCIV- 56
           E+GN +    C VCG   +G  Y      G R F       SIR   +Y C +   CI  
Sbjct: 426 ELGNNEGVYHCNVCGRDGTGFFY--EHHIGERRFRLDLRCASIREPFEYQCHKHPLCIAS 483

Query: 57  DVTRRNQCQACRFSKCLRVN 76
           ++ ++ +CQ C+     ++N
Sbjct: 484 ELEKKVRCQICKGKSYSKLN 503


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 2   EIGNCKPEAFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNL 44
           E G+C PE   ++ G K  GK Y +P+ D   G       +N+
Sbjct: 454 EAGDC-PEFSIKLIGQKKKGKQYDMPTTDEIAGLIVGDFSKNI 495


>At1g61380.1 68414.m06917 S-locus protein kinase, putative similar
           to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 805

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 45  DYVCKESGRCIVDVTRRNQCQACRFSKCLRVNMKKEAVQHERAPRP 90
           D  C+  G  ++D    + CQA   ++C+++ +    VQHE   RP
Sbjct: 707 DSWCETGGSNLLDRDLTDTCQAFEVARCVQIGLL--CVQHEAVDRP 750


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 14/71 (19%)

Query: 10  AFCRVCGDKASGKHYGVPSCD-----GC-----RGFFKRSIRRNLDYVCKESGRCIVDVT 59
           + C +CG+  +G  +G   CD      C     RG   +S    L Y  K      +  T
Sbjct: 196 SLCHICGESIAGVPFGCLECDFDAHLRCLDSFLRGLMHKSHPHRLIYRTKSH----ISFT 251

Query: 60  RRNQCQACRFS 70
             +QCQ CR S
Sbjct: 252 ENDQCQICRRS 262


>At1g14260.2 68414.m01690 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 265

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 10  AFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDV 58
           A CR+C D+   K+   P C  C G  K + R+ +   C E G  I ++
Sbjct: 55  AECRICQDECDIKNLESP-C-ACNGSLKYAHRKCVQRWCNEKGNTICEI 101


>At1g14260.1 68414.m01689 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 265

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 10  AFCRVCGDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDV 58
           A CR+C D+   K+   P C  C G  K + R+ +   C E G  I ++
Sbjct: 55  AECRICQDECDIKNLESP-C-ACNGSLKYAHRKCVQRWCNEKGNTICEI 101


>At5g25560.1 68418.m03041 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam domain PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 308

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 8/54 (14%)

Query: 4   GNCKPEAFCRVC---GDKASGKHYGVPSCDGCRGFFKRSIRRNLDYVCKESGRC 54
           G C  + FC+VC    D  S K Y    CDGC G  +   R N  + C + G C
Sbjct: 131 GVCMGKYFCKVCKLYDDDTSKKQY---HCDGC-GICRIGGRENF-FHCYKCGCC 179


>At3g21160.1 68416.m02673 mannosyl-oligosaccharide
           1,2-alpha-mannosidase, putative similar to
           mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine
           max][GI:6552504]
          Length = 572

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 14  VCGDKASG-KHYG---VPSCDGCRGFFKRSIRRNLDYVCKESGRCIVDVTRRNQCQA 66
           V G+K S  KHY      S +G     K+S   +  Y+C++SG  ++D      C A
Sbjct: 323 VFGNKTSAVKHYRDMWEKSMNGLLSLVKKSTPLSFTYICEKSGNSLIDKMDELACFA 379


>At2g23210.1 68415.m02772 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 453

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 163 GTIGSETSHMCPLLSPQVGTLNPLSPFKIPLFSTSLHY 200
           G+I  + +H+  +  P  G LNP+  F   L  T+LH+
Sbjct: 2   GSIEGQETHVLMVALPFQGHLNPMLKFAKHLARTNLHF 39


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.136    0.431 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,013,421
Number of Sequences: 28952
Number of extensions: 272490
Number of successful extensions: 547
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 540
Number of HSP's gapped (non-prelim): 15
length of query: 302
length of database: 12,070,560
effective HSP length: 81
effective length of query: 221
effective length of database: 9,725,448
effective search space: 2149324008
effective search space used: 2149324008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)