Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000669-TA|BGIBMGA000669-PA|IPR000980|SH2 motif
         (644 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    25   2.1  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.7  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    23   4.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   4.9  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 335 SSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNS 394
           S++   +   S   N   T +       N   N NM    +   +K++DP    K  KN 
Sbjct: 87  STEMLLKKDSSEAFNEFRTKILAQVHGTNNGTNKNMRRLSTTTQNKNDDPSYWEKRRKN- 145

Query: 395 CGTNMKSKKQKD-NLAKDIEV 414
              N  +K+ +D   AK+ E+
Sbjct: 146 ---NEAAKRSRDARRAKEDEI 163


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/26 (30%), Positives = 15/26 (57%)

Query: 65  MCDFFNTVKKGPGKVILTTIEPPPEF 90
           +C+  N +  G   VI  +++ PP+F
Sbjct: 774 LCEAVNGIGSGLSAVIQISVQAPPQF 799


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 423 KNASNPTQKPKMSTVRILSINLKQSFCNLFRWRRQPVVDNVTEVER 468
           K+ S+PT   K++T    S+N+     N+ R+R     + +  +E+
Sbjct: 45  KDCSSPTPSDKLNTSTTSSVNVNDQ--NIRRYRTAFTREQLARLEK 88


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.4 bits (48), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 83  TIEPPPEFQDNPEKNAEAKTCTT 105
           T  PPPE +  P K+A +K   T
Sbjct: 100 TPSPPPEERLTPSKDASSKRIXT 122


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.129    0.375 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,172
Number of Sequences: 317
Number of extensions: 5007
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 5
length of query: 644
length of database: 114,650
effective HSP length: 61
effective length of query: 583
effective length of database: 95,313
effective search space: 55567479
effective search space used: 55567479
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)