Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000669-TA|BGIBMGA000669-PA|IPR000980|SH2 motif
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 35 0.040
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 33 0.093
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 33 0.16
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 33 0.16
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 32 0.21
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 32 0.28
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.65
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc... 31 0.65
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 31 0.65
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 30 0.87
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 29 2.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 29 2.0
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 2.0
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 29 2.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 29 2.6
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 29 2.6
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 28 3.5
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 28 3.5
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 28 4.6
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 28 4.6
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 6.1
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 6.1
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 6.1
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1... 27 6.1
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 8.1
SPBC32H8.01c ||SPBP22H7.10c|conserved fungal protein|Schizosacch... 27 8.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 8.1
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 8.1
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 34.7 bits (76), Expect = 0.040
Identities = 32/170 (18%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 280 KHHKAK--ESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSSD 337
KH+ A +++ HK+ I+ S S + ++S+ D+L + ++ K L S D
Sbjct: 304 KHNVANYSDAIVHKDKLIEDLSTRISEFDN--LKSERDTLSIKNEKLEKLLRNTIGSLKD 361
Query: 338 SECRNTVSRKNNTVITSVG--VHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSC 395
S N+ + + +H++ + ++ + F +++ + S D Y S+K+
Sbjct: 362 SRTSNSQLEEEMVELKESNRTIHSQLTDAESKLSSFEQENKSLKGSIDEYQNNLSSKDKM 421
Query: 396 GTNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKPKMSTVRILSINLK 445
+ S+ ++ A+ T K + N+ Q K+ + +L+
Sbjct: 422 VKQVSSQLEE---ARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLR 468
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 33.5 bits (73), Expect = 0.093
Identities = 18/85 (21%), Positives = 37/85 (43%)
Query: 381 SNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKPKMSTVRIL 440
+ D N N T+++++++ NL D+ +D P+K ++ P + S +
Sbjct: 266 NQDSSNTIDLINNRSKTSVENQERTFNLTSDVHLDSPTSPSKHSSIEPNTSQEDSFQELP 325
Query: 441 SINLKQSFCNLFRWRRQPVVDNVTE 465
S+N F+ R P + T+
Sbjct: 326 SLNKLSIQSRAFKKMRLPKISRTTD 350
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 32.7 bits (71), Expect = 0.16
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 333 SSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTK 392
S SSDSE ++ S +++ +S + ++D NSN S E+S + +
Sbjct: 285 SDSSDSESESS-SEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEES 343
Query: 393 NSCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPT 429
S SK +L + E D++ TK + + T
Sbjct: 344 TSVKDEDSSKIHDKSLKRKHEDDESSTSTKSSRTTKT 380
Score = 30.7 bits (66), Expect = 0.65
Identities = 24/111 (21%), Positives = 59/111 (53%), Gaps = 6/111 (5%)
Query: 333 SSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQ-RKST 391
SSSSDSE ++ S +++ +S ++ +KD++S+ DS + S S+ ++ S+
Sbjct: 238 SSSSDSESESS-SEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS 296
Query: 392 KNSCGTNMKSKKQKDNLAKD----IEVDKTEKPTKKNASNPTQKPKMSTVR 438
++S T+ S + ++D + + + + ++++N T + ++V+
Sbjct: 297 EDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEESTSVK 347
Score = 29.1 bits (62), Expect = 2.0
Identities = 36/168 (21%), Positives = 67/168 (39%), Gaps = 5/168 (2%)
Query: 268 SQNTSIPHASIEKHHKAKESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKY 327
SQ S A EK H + E+ + S S S + + S + E
Sbjct: 83 SQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSSSDSESESSSE 142
Query: 328 LHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQ 387
SSSSDSE ++ S +++ +S ++ ++D +S+ DS S S D
Sbjct: 143 DSDSSSSSSDSESESS-SEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSED---- 197
Query: 388 RKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKPKMS 435
S+ +S + +S + + + ++E ++ N S+ + S
Sbjct: 198 SDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSES 245
Score = 27.1 bits (57), Expect = 8.1
Identities = 22/124 (17%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 306 KRNIVESDTDSLQLTLREM--RKYLHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVN 363
K ++ +S+ DS +++ + K + +S S S + S + + +S + +
Sbjct: 73 KESLEKSNDDSQKISKKGAPPEKAHSSSEASGSGSSSDESDSSSSESESSSEDNDSSSSS 132
Query: 364 KDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKK 423
D+ S +DS+ S S+D ++ S++ S ++ S + ++ ++D + + ++
Sbjct: 133 SDSESESSSEDSDSSSSSSDSESE-SSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSES 191
Query: 424 NASN 427
+S+
Sbjct: 192 ESSS 195
Score = 27.1 bits (57), Expect = 8.1
Identities = 17/94 (18%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Query: 334 SSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKN 393
SSS+ ++ S + + +S + + D+ S +DS+ S S+D ++ S++
Sbjct: 157 SSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESE-SSSEG 215
Query: 394 SCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASN 427
S ++ S + ++ ++D + + ++ +S+
Sbjct: 216 SDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 249
Score = 27.1 bits (57), Expect = 8.1
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 2/133 (1%)
Query: 299 SLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSSDSECRN-TVSRKNNTVITSVGV 357
S SSS + E + S + E SSSS S+ + + S +++ +S
Sbjct: 166 SSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSS 225
Query: 358 HAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKT 417
++ ++D +S+ DS S S D + S+ + ++ K N + D E D +
Sbjct: 226 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSN-SSDSEDDSS 284
Query: 418 EKPTKKNASNPTQ 430
+ + + ++
Sbjct: 285 SDSSDSESESSSE 297
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 32.7 bits (71), Expect = 0.16
Identities = 32/107 (29%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 364 KDANSNMFHK--DSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPT 421
KD+ +N F K N++SK+N Q +S + S + NL KDI K K
Sbjct: 796 KDSGTNDFDKLISGNDVSKNNSGEEQSRSALKPLISGKLSSCESINLTKDISTVK-RKEY 854
Query: 422 KKNASNPTQKPKMSTVRILSINLKQSFCNL---FRWRRQPVVDNVTE 465
S +++P T I I K+SF + FR P D + E
Sbjct: 855 FGIESTSSKQPFHDTGSI-KIPAKRSFDTIDKDFRSSNIPFADKIKE 900
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 32.3 bits (70), Expect = 0.21
Identities = 48/197 (24%), Positives = 78/197 (39%), Gaps = 16/197 (8%)
Query: 280 KHHKAKESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSSDSE 339
K KES + + H L S K++ ESD D + + R +SS
Sbjct: 23 KRISMKESDEESDSS-ENHPLSESLNKKSKSESDEDDIPIRKRR----------ASSKKN 71
Query: 340 CRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNM 399
N+ S+K V+ + G+ K+ K A +D NEI+K + P ++R S N
Sbjct: 72 MSNSSSKKRAKVMGNGGL--KNGKKTAVVKE-EEDFNEIAKPS-PKHKRVSKANGSKNGA 127
Query: 400 KSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKPK-MSTVRILSINLKQSFCNLFRWRRQP 458
KS +K+ D V T ++ P ST + S N ++ ++W
Sbjct: 128 KSAVKKEESDTDDSVPLRAVSTVSLTPYKSELPSGASTTQNRSPNDEEDEDEDYKWWTSE 187
Query: 459 VVDNVTEVERLGKQGKI 475
+D+ + L G I
Sbjct: 188 NIDDTQKWTTLEHNGVI 204
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 31.9 bits (69), Expect = 0.28
Identities = 25/102 (24%), Positives = 51/102 (50%), Gaps = 3/102 (2%)
Query: 337 DSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCG 396
DSE + N V+ S + +KD +S++ ++ E K ND + + S
Sbjct: 626 DSEVNGESLVQVNKVLKSEDDNTSEASKDPSSHVKSPENIEKLKQNDDHFEVTEEITSTI 685
Query: 397 TNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKPKMSTVR 438
+ S+KQ++N+A+ I ++ T P K++ N ++ +++ R
Sbjct: 686 NSKISEKQENNVAETI-LEVTSSP--KSSENSQKQSEITKKR 724
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.65
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 360 KHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLA------KDIE 413
+ +DA+ + S S+S P + K+ KN N S DN + +D E
Sbjct: 6 RSTQRDADLELESLQSEIESESPQPVTKSKAKKNKKKLNKASAFNSDNDSNYDLKPEDDE 65
Query: 414 VDKTEKPTKKNASNPTQKPK 433
VD+ P KK S ++K K
Sbjct: 66 VDEEVVPVKKKPSKKSKKAK 85
>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 488
Score = 30.7 bits (66), Expect = 0.65
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 496 TSHASRRATNDEETIMDFAKSIQKVKDYGWYWGPLSVEAAEKILSNEPDGSFIVRDSSDD 555
TS AT D +I +F S ++ G + ++ L P G +++ S++
Sbjct: 258 TSSKIAVATADAISIFEFPVSSSGLQSVGEPTSSIPIDEKVNFLQAHPSGEYLLAASNEK 317
Query: 556 HYIFTL---TFKLNGLRHVR--IEHDQGNFCFGG 584
YIF+L + + +H+ H GN G
Sbjct: 318 CYIFSLKSQVYNITVAQHITSLAVHPDGNLFVAG 351
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 30.7 bits (66), Expect = 0.65
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 327 YLHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKD-SNEISKSNDPY 385
+ HT S+ S RN SR+N + NK + KD S I SN
Sbjct: 154 FTHTPISNRKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSA 213
Query: 386 NQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASN--PTQK 431
R N+ G+ S + + E ++ P ++S P+Q+
Sbjct: 214 EYRDDINNTFGSQTVSSANGKEVPQTSEDSSSQAPHHSSSSGHAPSQQ 261
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 30.3 bits (65), Expect = 0.87
Identities = 31/146 (21%), Positives = 58/146 (39%), Gaps = 10/146 (6%)
Query: 273 IPHASIEKHHKAKESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHT-L 331
IP +I K KES + S P S K N ++D+D L L+ ++++ +
Sbjct: 331 IPEGTIIK----KESSDDAMFSGLKKSKPKKSNKSNNNQADSDRLNLSFGTIKEFDFVGV 386
Query: 332 YSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKST 391
+ + S+ + V + + + H K K EI K YN ++
Sbjct: 387 PAPFTKSQVDSAVEQLKSRI-----AHFKEQQDSVTKQRIEKAKQEIEKLEAKYNSKEEK 441
Query: 392 KNSCGTNMKSKKQKDNLAKDIEVDKT 417
+ + S ++ + D+EV+ T
Sbjct: 442 TLTEADMVISSEETVTVTNDLEVEAT 467
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 29.1 bits (62), Expect = 2.0
Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 291 KEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSSDSECRNTVSRKN-- 348
K++K + +L + ++S +LT+ ++ L TL +++ +C +S KN
Sbjct: 501 KDLKNTKGNLDDEIGRSAFLKSQIRDQELTIEKLHDSLETLSQTNNSLQCE--ISEKNAE 558
Query: 349 -NTVITSVGVHAKHVNKDANSNMFHKDSNEISKS 381
N+V + + H+ N K E+S+S
Sbjct: 559 LNSVNSKLSEGRAHLETANKENEILKQQLELSES 592
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 290 HKEIKIKRHSLPSSSYKRNIV--ESDTDSLQLTLREMRKYLHTLYSSSSDSE 339
HKE+ + S P S+++R + + +D LQL L +R Y+ L S ++
Sbjct: 889 HKEMLVVLSSQPKSTFRRAVENWKYKSDYLQLNLVRLRVYISVLEKYKSQAQ 940
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 29.1 bits (62), Expect = 2.0
Identities = 28/155 (18%), Positives = 57/155 (36%)
Query: 268 SQNTSIPHASIEKHHKAKESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKY 327
S+++S S + ES +K + SS + + + + + E ++
Sbjct: 103 SESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIEEKKES 162
Query: 328 LHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQ 387
S SS SE + S + V + + ++ + +S+ S S +
Sbjct: 163 SSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSD 222
Query: 388 RKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTK 422
S S ++ KK+K A + K KP++
Sbjct: 223 SSSDSESESSSEDEKKRKAEPASEERPAKITKPSQ 257
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 28.7 bits (61), Expect = 2.6
Identities = 26/114 (22%), Positives = 58/114 (50%), Gaps = 8/114 (7%)
Query: 284 AKESVRHKEIKIKRHSLPSSSYK---RNIVESDTDSLQLTLREMRKYLHTLYSSSSDSEC 340
A + V ++ K++ +LP S + R++V S + L T+R + YLH+ S +++
Sbjct: 969 AVDHVFSRQFKLRLMALPGSRIRPPFRSLVVS-INGLA-TIRTLDNYLHSRISVRNETGR 1026
Query: 341 RNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNS 394
R ++ R+ ++ S+ +++ + D +M N + +P +R S+ +S
Sbjct: 1027 RFSILREAGSLRESMSGSSRNSSGDYTDSMSQDAPNH---TTEPSERRDSSTSS 1077
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 2.6
Identities = 18/78 (23%), Positives = 38/78 (48%)
Query: 291 KEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSSDSECRNTVSRKNNT 350
K I+++ +L S +++RN+ S + S + RE++ + E RN++ + T
Sbjct: 857 KAIQLELENLSSQAFRRNLSGSSSPSERSQSRELKLLQASEKRLKEQVEERNSLIKNIVT 916
Query: 351 VITSVGVHAKHVNKDANS 368
T + +K VN + +
Sbjct: 917 RFTQLNTGSKPVNTNVEA 934
>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 284
Score = 28.7 bits (61), Expect = 2.6
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 373 KDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKKNASNPTQKP 432
+D + + + ++ K K ++ K K+K + ++ K EK TKK +K
Sbjct: 148 EDEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKD 207
Query: 433 KMST 436
K S+
Sbjct: 208 KESS 211
>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 642
Score = 28.3 bits (60), Expect = 3.5
Identities = 28/143 (19%), Positives = 56/143 (39%), Gaps = 6/143 (4%)
Query: 283 KAKESVRHKEIKIKRHSLPSSSY----KRNIVESDTDSLQLTLREMRKYLHTLYSSSSDS 338
K K+ +K +K+ + S+ K+N S + + +K +L S +
Sbjct: 13 KKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMSQNDKKKDSSLNESEDED 72
Query: 339 ECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTN 398
S N + S A++ + ++ K+S+ K +RK+ K T+
Sbjct: 73 FAGFGESASENDELESAESEAENDEESSSQKSNSKESHAQRKKLQ--KERKAMKPFADTS 130
Query: 399 MKSKKQKDNLAKDIEVDKTEKPT 421
+K+K D L + + E+ T
Sbjct: 131 LKAKSLWDKLRQKTSIKAEERKT 153
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 86 PPPEFQDNPEKNAEAKTCTTVNILSQPAASIENSSK 121
PP E + P N + ++ + VN + P+A+ SSK
Sbjct: 234 PPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSK 269
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 27.9 bits (59), Expect = 4.6
Identities = 32/151 (21%), Positives = 63/151 (41%), Gaps = 11/151 (7%)
Query: 333 SSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSN-------DPY 385
+S + N +++ +V + + H N +ANSN +N++S+ N + Y
Sbjct: 131 NSQASPNIMNAPLQRDTSVPPAPSMVHPHTNTNANSNNLKVYANQLSQQNTSNPTYHNAY 190
Query: 386 NQRKSTKNSCGTNMKSKKQKD-NLAKDIEVDKTEKPTKKNASNPTQKPKMSTVRILSINL 444
+ KN N A D V+ + + + S+ ++P R S++
Sbjct: 191 DMASMMKNGSRMNNSFPPTTPYPPANDTTVNSSLPHSFASPSSTFEQPHTVQSRAPSVDT 250
Query: 445 KQSFCNLFRWRRQPVVDNVTEVERLGKQGKI 475
S + F R P NV+ +++G++G I
Sbjct: 251 TSS-SHSFSARNIPA--NVSMQQQMGRRGSI 278
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 357 VHAKHVNKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNM-KSKKQKDNLAKDIEVD 415
+H +K+ + + +ISK D + ++T ++ KSKK+ ++L+K +EV+
Sbjct: 530 LHEAINSKNVQQSRSEELEQQISKLTDNLQEYRNTVRELKLDLEKSKKKNEDLSK-LEVE 588
Query: 416 KTEK 419
K E+
Sbjct: 589 KVEE 592
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 27.5 bits (58), Expect = 6.1
Identities = 43/255 (16%), Positives = 96/255 (37%), Gaps = 13/255 (5%)
Query: 267 ISQNTSIPHASIEKHHKAKESVRHKE--IKIKRHSLPSSSYKRNIVE---SDTDSLQLTL 321
+ QN + AS+ K +K K + R K+ K K+ S +S+ + E + + + T+
Sbjct: 34 VEQNNNSSQASVTKDNKKKAAKRAKKKAAKKKKQSAAASASSTPVEEAQHAQEEQQEQTI 93
Query: 322 REMRKYLHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKS 381
+ + T+ +D + + ++ + +V + + S +
Sbjct: 94 LQEPGFTQTIVEKDAD-QVDEPLEPIASSALGTVEPPTDNKPSASTSTAVPTTEARNTSI 152
Query: 382 NDPYNQRKSTKNSCGTNMKSKKQKDN--LAKDIEVDKTEKPTKKNASNPTQKPKMSTVRI 439
+P N S+ +S T + Q + +A+ + ++ + ++ T KP ++
Sbjct: 153 TEPANSPSSSSSSASTKSTATTQSADYVVAEHFAPQRNDEQLGNSPASITSKPATTSAAQ 212
Query: 440 LSINLKQSFCNLFRWRRQPVVDNVTEVERLG--KQGKIDESXXXXXXXXXXXXXQTPHTS 497
S +++ N+ + QP+ E+ L + I S T +
Sbjct: 213 PSSKVEE---NMAKATSQPITTAEKEIPELKPIEPEAIMISKEINTTHDQAAATTTAAVA 269
Query: 498 HASRRATNDEETIMD 512
AS AT + + D
Sbjct: 270 SASTTATAESHAVAD 284
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 6.1
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 277 SIEKHHKAKESVRHKEIKIKRHSLPSSSYKRNIVESDTDSLQLTLREMRKYLHTLYSSSS 336
S+EK+H S+ + I I + + SSS + + D+++ L E K+L+ SS
Sbjct: 973 SLEKNHLKITSLEQR-IVILQDEIASSSLRCENITKDSETRVALLLEENKHLNNELSSHR 1031
Query: 337 DSE 339
++E
Sbjct: 1032 NAE 1034
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.5 bits (58), Expect = 6.1
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 382 NDPYNQRKSTKNSCGTNMKSK-KQKDNLAKDIEVDKTEKPTKKNASNPTQKPKMST 436
N P K ++ T MK K + D KD+E +KTE KK + K + +
Sbjct: 135 NSPIENEKILEDDQHTAMKEKDNESDKTMKDVE-EKTEPSLKKEEEDIQMKEPLDS 189
>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1023
Score = 27.5 bits (58), Expect = 6.1
Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 69 FNTVKKGPGKVILTTIEP---PPEFQDNPEKNAEAKTCTTVNILSQPAASIENSSKNLK 124
F KK P K L T E PP+ KN + K+ T VN +SQ +E SS + K
Sbjct: 216 FEFPKKIPSKEDLETREVLLLPPQTSKLSNKNLDTKSFTDVNKISQ-QGFVEISSNSSK 273
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/101 (20%), Positives = 44/101 (43%), Gaps = 2/101 (1%)
Query: 323 EMRKYLHTLYSSSSDSECRNTVSRKNNTVITSVGVHAKHVNKDANSNMFHKDSNEISKSN 382
+ KY ++ S+ EC N R + S ++ +A+ N +D E +S+
Sbjct: 672 KFEKYEASIDFSTMKVECSNEALRSRVVHVLSRAINTILPFSEASQNDVSEDDFENEESD 731
Query: 383 DPYNQRKSTKNSCGTNMKSKKQKDNLAKDIEVDKTEKPTKK 423
D + TK ++K++ + + + + +K E+P K
Sbjct: 732 DDKIFEQQTK--IEDDVKNENKTEPVEEQKSEEKNEQPNLK 770
>SPBC32H8.01c ||SPBP22H7.10c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 187
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 2/50 (4%)
Query: 363 NKDANSNMFHKDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKDNLAKDI 412
N + KD + S N+ N S+ C T +SK NL +DI
Sbjct: 104 NLEVQQTEKEKDVDSASAENESINSSSSSSKECSTQTQSKHY--NLHRDI 151
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 8.1
Identities = 23/87 (26%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 270 NTSIPHASIEKHHKAKESVRHKEIKIK-RHSLPSSSYKRNIVESDTDSLQLTLREMRKYL 328
+TS+ S + + HK + K +HS SS+ + T S+ L +
Sbjct: 299 DTSLAAMSYDNSSETFVEAIHKILDTKSKHSSSKSSHDSSQGLESTSSIALNPTSS---I 355
Query: 329 HTLYSSSSDSECRNTVSRKNNTVITSV 355
+ SSSS S +T+S+ + +TSV
Sbjct: 356 SSTSSSSSTSSAISTISQDHTKTVTSV 382
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 27.1 bits (57), Expect = 8.1
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 8/72 (11%)
Query: 363 NKDANSN-----MFHKDSNEISKSNDPYNQRKSTKNSCGTNMKSKKQKD-NLAKDIEVDK 416
NKD++ N + K N + K + Q +T +S N+ S+ D +LA + E+ K
Sbjct: 136 NKDSDRNSRLQQLIEKKRNALKKEQEDLIQNSATSHSKSDNLDSESADDSDLADESELSK 195
Query: 417 TEKPTKK--NAS 426
+K NAS
Sbjct: 196 KYTSDRKIRNAS 207
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.129 0.375
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,730,689
Number of Sequences: 5004
Number of extensions: 110402
Number of successful extensions: 498
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 48
length of query: 644
length of database: 2,362,478
effective HSP length: 77
effective length of query: 567
effective length of database: 1,977,170
effective search space: 1121055390
effective search space used: 1121055390
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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