GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000668-TA|BGIBMGA000668-PA|IPR006683|Thioesterase
superfamily
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    64   4e-12
SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    27   0.46 
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    27   0.60 
SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    26   1.1  
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    26   1.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    25   1.8  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    25   1.8  
SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...    25   2.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   2.4  
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   2.4  
SPAP11E10.01 |||ornithine cyclodeaminase family |Schizosaccharom...    25   3.2  
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    24   4.3  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    24   4.3  
SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|c...    24   5.6  
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    24   5.6  
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    24   5.6  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   9.8  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    23   9.8  

>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 64.1 bits (149), Expect = 4e-12
 Identities = 38/93 (40%), Positives = 52/93 (55%), Gaps = 3/93 (3%)

Query: 11  HLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSF-YSAAKEGDNIEVEAK 69
           HLN+ G LHGG IA L D   + AL  +  +   GVSID++ +F  S    G +I + AK
Sbjct: 55  HLNRMGNLHGGCIAALTDLGGSLAL-ASRGLFISGVSIDMNQTFLQSGGTLGSSILLHAK 113

Query: 70  TRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 102
             + G  IAF  V+      N+V A GRHTK++
Sbjct: 114 CDRLGSNIAFTSVDFLT-SSNEVFAKGRHTKFV 145


>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 0.46
 Identities = 11/36 (30%), Positives = 18/36 (50%)

Query: 41  VDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKK 76
           +  +G+    S    SA   GD++EVE +  K  K+
Sbjct: 268 ISKQGIKFKTSTKLLSAKVNGDSVEVEIENMKNNKR 303


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 27.1 bits (57), Expect = 0.60
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 58  AKEGDNIEVEAKTRKTGKKIAFLEVE-VRNKDKNQ 91
           AKE D+IEV+ K  KT  K    +VE   +KD N+
Sbjct: 496 AKETDSIEVDDKEEKTDSKETADKVEQTDSKDTNE 530


>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 26.2 bits (55), Expect = 1.1
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)

Query: 15  RGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKT- 73
           +  +HGGFI  ++D    + +  N      GV++ L  ++ + A      ++  KT K  
Sbjct: 74  KNIVHGGFITTMLDEALAFGVFPN-FPSKMGVTVQLDTTYVAPALCSHLYKIVTKTTKVE 132

Query: 74  GKK 76
           G+K
Sbjct: 133 GRK 135


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 39  ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTR--KTGKKIAFLEVEVRNKDKNQVLASG 96
           E++D    SIDL +S  +A     N+         KT +K + +  E  N+D N + ++G
Sbjct: 123 ESMDIDMPSIDLDISNAAAFPRDSNLLFRNYNSHTKTSEKGSPVNFEKENQDSNVLFSTG 182

Query: 97  R 97
           R
Sbjct: 183 R 183


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 39  ENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDK 89
           E+VD + +S++ SL+     K+GD  + EA  R+      F E +  +  K
Sbjct: 113 EHVDHQNISLEASLAEEEERKKGDAKKSEATGRQLFDDDDFDESDAEDSSK 163


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)

Query: 43  TRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQ 91
           TRGV +     F   A+E D I+ +  T K  K I   E+EV  + K +
Sbjct: 86  TRGVKV-----FREQARETDEIDFQLITSKVTKLIDSSEIEVDAEPKEE 129


>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 27  VDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNI 64
           +D +  YA  T      RG+ I ++L  Y   +E D I
Sbjct: 512 IDEMLQYAHETQHEKIIRGLGIGIALIVYGRQQEADGI 549


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 25  HLVDAISTYALTTNENVDTRGVSIDLSLSF 54
           H V + ST+ +  ++N+   G+++  SLS+
Sbjct: 142 HFVTSPSTFFIRYDDNITVAGINVQDSLSY 171


>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 538

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 38  NENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 97
           NE + ++G ++  SL    A+KE  + EV    +    K+   EV  + KD +  L + +
Sbjct: 9   NERITSQG-NLVRSLKSQGASKEDIDKEVAKLLQLKNLKLGGSEVSGKKKDTSFTLKTPK 67

Query: 98  HTK 100
            TK
Sbjct: 68  GTK 70


>SPAP11E10.01 |||ornithine cyclodeaminase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 330

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 18  LHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEG 61
           L GGF  H+ +A S     +N  VDTR  ++  +    +  KEG
Sbjct: 228 LVGGFTPHMHEADSKCIQISNVFVDTRKGALHEAGDLLTPIKEG 271


>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 10/32 (31%), Positives = 21/32 (65%)

Query: 38  NENVDTRGVSIDLSLSFYSAAKEGDNIEVEAK 69
           NE++ T+ V I+L+ ++Y+A   G + + + K
Sbjct: 109 NEDIWTKVVGINLNGAYYTAQAAGHHFKKQGK 140


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 14/40 (35%), Positives = 20/40 (50%)

Query: 63   NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 102
            N E+EAK ++    I  L  E+ NK++     S    KYI
Sbjct: 1112 NKELEAKVKECLNNIKSLTKELENKEEKCQNLSDASLKYI 1151


>SPBC119.14 |rti1||Rad22 homolog Rti1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 371

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 6/80 (7%)

Query: 6   QVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSI---DLSLSFYSAAKEGD 62
           Q+GPE++++R    GG + +L +A     L  NE     G S    D+ + +    KE  
Sbjct: 28  QLGPEYISRRSGPGGGSVTYL-EAWKAIEL-ANEIFGFNGWSSSIQDIHVDYVEETKEKK 85

Query: 63  -NIEVEAKTRKTGKKIAFLE 81
            N+ +    R T K  +F E
Sbjct: 86  FNVGISVIVRVTLKDGSFHE 105


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 51  SLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVL 93
           S  F ++A +  N+E ++    TG+ +    V   N+D  +V+
Sbjct: 83  SEQFENSALKDINVEYQSNLSATGESVNTTTVSAINEDTREVI 125


>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 10  EHLNQRGTLHGGFIAHLVDAISTYALTTNENVDT-RGVSIDLSLS 53
           +HL QRG + GG    + D     A   NE  D+  G   DL LS
Sbjct: 953 DHLAQRGNMLGGIENTMDDLEEMSAEWANEIKDSLAGTKKDLILS 997


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
           Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 9   PEHLNQRGTLHGGFIA 24
           PEH++  GT +G F+A
Sbjct: 813 PEHMHCFGTFYGPFVA 828


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 23.0 bits (47), Expect = 9.8
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 65  EVEAKTRKTGKKIAFLEVE 83
           E+E++TR+  KKI  +++E
Sbjct: 734 EIESRTREAKKKIMMVQLE 752


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.132    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,613
Number of Sequences: 5004
Number of extensions: 14813
Number of successful extensions: 39
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 23
Number of HSP's gapped (non-prelim): 19
length of query: 104
length of database: 2,362,478
effective HSP length: 63
effective length of query: 41
effective length of database: 2,047,226
effective search space: 83936266
effective search space used: 83936266
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 47 (23.0 bits)