Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000668-TA|BGIBMGA000668-PA|IPR006683|Thioesterase
superfamily
(104 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L08403-2|AAA28024.2| 169|Caenorhabditis elegans Hypothetical pr... 71 1e-13
U29535-15|AAN63449.1| 148|Caenorhabditis elegans Hypothetical p... 70 3e-13
U29535-16|AAN63448.1| 143|Caenorhabditis elegans Hypothetical p... 69 6e-13
U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five) in... 26 5.8
U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five) in... 26 5.8
U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five) in... 26 5.8
U41033-2|AAA82373.1| 328|Caenorhabditis elegans Hypothetical pr... 26 5.8
AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote defect... 26 5.8
AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote defec... 26 5.8
U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear fa... 25 7.7
U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear fa... 25 7.7
U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear fa... 25 7.7
>L08403-2|AAA28024.2| 169|Caenorhabditis elegans Hypothetical
protein F42H10.6 protein.
Length = 169
Score = 71.3 bits (167), Expect = 1e-13
Identities = 37/99 (37%), Positives = 55/99 (55%), Gaps = 1/99 (1%)
Query: 1 MVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKE 60
+V E V +HLN +GTLHGG A L D I+ A+ D S++L++S+ K
Sbjct: 54 LVCEMVVQHQHLNSKGTLHGGQTATLTDVITARAVGVTVK-DKGMASVELAVSYLLPVKV 112
Query: 61 GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHT 99
GD +E+ A K G+ +AF + E R K ++ A G+HT
Sbjct: 113 GDVLEITAHVLKVGRTMAFTDCEFRRKSDGKMSAKGKHT 151
>U29535-15|AAN63449.1| 148|Caenorhabditis elegans Hypothetical
protein C25H3.3 protein.
Length = 148
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/97 (37%), Positives = 58/97 (59%), Gaps = 1/97 (1%)
Query: 4 EFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDN 63
EF+V + N TLHGG + L+D +T AL + GVS+DL +++ +AAK G+
Sbjct: 44 EFEVEKDQSNHFNTLHGGCTSTLIDIFTTGALLLTKPARP-GVSVDLHVTYLTAAKIGET 102
Query: 64 IEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTK 100
+ +++ K GK +AF + E+ K N ++A+G HTK
Sbjct: 103 LVLDSTVIKQGKTLAFTKAELYRKSDNVMIATGVHTK 139
>U29535-16|AAN63448.1| 143|Caenorhabditis elegans Hypothetical
protein C25H3.14 protein.
Length = 143
Score = 68.9 bits (161), Expect = 6e-13
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 4 EFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDN 63
EF+V + NQ TLHGG A L+D +T AL + GVS+DL +++ +AA G+
Sbjct: 44 EFEVEKDQTNQFETLHGGCTAALIDCFTTGALLLTKEARP-GVSVDLHITYLTAANIGET 102
Query: 64 IEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTK 100
+ + + K G+ + F + E+ K N ++A+G HTK
Sbjct: 103 LVLNSTVIKQGRSLGFTKAELYRKRDNAMIATGVHTK 139
>U64862-5|AAQ91890.1| 2350|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform d protein.
Length = 2350
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 63 NIEVEAKTRKTGKKIAFLEVEV-RNKDK 89
NIE+E++ + +KIA LE E+ RN++K
Sbjct: 455 NIELESRGDDSQRKIAELEAELRRNREK 482
>U64862-4|AAZ32792.1| 2117|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform b protein.
Length = 2117
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 63 NIEVEAKTRKTGKKIAFLEVEV-RNKDK 89
NIE+E++ + +KIA LE E+ RN++K
Sbjct: 528 NIELESRGDDSQRKIAELEAELRRNREK 555
>U64862-3|AAM69078.1| 2396|Caenorhabditis elegans Lin-5 (five)
interacting proteinprotein 1, isoform a protein.
Length = 2396
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 63 NIEVEAKTRKTGKKIAFLEVEV-RNKDK 89
NIE+E++ + +KIA LE E+ RN++K
Sbjct: 528 NIELESRGDDSQRKIAELEAELRRNREK 555
>U41033-2|AAA82373.1| 328|Caenorhabditis elegans Hypothetical
protein K09E3.6 protein.
Length = 328
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 69 KTRKTGKKIAFLEVEVRNKDKNQVLASGRHTK 100
K RK K+ +EV++ N ++NQV R K
Sbjct: 147 KKRKANKEEPEMEVDIPNGERNQVKKQARTRK 178
>AF285179-1|AAG15377.1| 706|Caenorhabditis elegans zygote
defective-1 protein.
Length = 706
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 33 YALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQV 92
Y + T N +G+ +S +A ++ +AK R +I E N ++N V
Sbjct: 199 YTMLTARNPPPKGLPPTCGMSPNAARLVEQMMDTDAKKRIPLTQIVLSEFMYENTNENAV 258
Query: 93 LASGRHTK 100
+ S H++
Sbjct: 259 IFSREHSR 266
>AF003386-12|AAB54253.2| 706|Caenorhabditis elegans Zygote
defective: embryonic lethalprotein 1 protein.
Length = 706
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/68 (23%), Positives = 30/68 (44%)
Query: 33 YALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQV 92
Y + T N +G+ +S +A ++ +AK R +I E N ++N V
Sbjct: 199 YTMLTARNPPPKGLPPTCGMSPNAARLVEQMMDTDAKKRIPLTQIVLSEFMYENTNENAV 258
Query: 93 LASGRHTK 100
+ S H++
Sbjct: 259 IFSREHSR 266
>U21308-9|AAW57822.1| 787|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform b protein.
Length = 787
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 11 HLNQRGTLHGGFIAHLVDAISTYALTTNEN 40
H N TL+ FI HL+D S L ++ N
Sbjct: 644 HSNDGTTLNDSFIQHLIDTNSRSPLLSSGN 673
>U21308-8|AAN60509.2| 807|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform a protein.
Length = 807
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 11 HLNQRGTLHGGFIAHLVDAISTYALTTNEN 40
H N TL+ FI HL+D S L ++ N
Sbjct: 664 HSNDGTTLNDSFIQHLIDTNSRSPLLSSGN 693
>U21308-7|AAW57823.1| 823|Caenorhabditis elegans Nfi (nuclear
factor i) family protein1, isoform c protein.
Length = 823
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 11 HLNQRGTLHGGFIAHLVDAISTYALTTNEN 40
H N TL+ FI HL+D S L ++ N
Sbjct: 680 HSNDGTTLNDSFIQHLIDTNSRSPLLSSGN 709
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.315 0.132 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,305,121
Number of Sequences: 27539
Number of extensions: 77030
Number of successful extensions: 204
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 12
length of query: 104
length of database: 12,573,161
effective HSP length: 71
effective length of query: 33
effective length of database: 10,617,892
effective search space: 350390436
effective search space used: 350390436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 53 (25.4 bits)
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