GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000668-TA|BGIBMGA000668-PA|IPR006683|Thioesterase
superfamily
         (104 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    25   0.25 
AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex det...    24   0.44 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    24   0.44 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   1.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   1.8  
AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex det...    21   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    19   9.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    19   9.5  

>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 24.6 bits (51), Expect = 0.25
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 72  KTGKKIAFLEVEVRNKDKNQVLASGRHTKYI 102
           KTGKKI+ LE E+ N  K Q   +     Y+
Sbjct: 280 KTGKKISELEKEMLNGQKLQGPFTAEEVNYM 310


>AY569719-1|AAS86672.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY569718-1|AAS86671.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY569715-1|AAS86668.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY569713-1|AAS86666.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY569711-1|AAS86664.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY569702-1|AAS86655.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 0.44
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     +R++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRY 234


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 15/70 (21%), Positives = 27/70 (38%)

Query: 13  NQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRK 72
           N+ G  H      +VD     + TT  ++  + V ID  +SF +      N     +   
Sbjct: 458 NKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNGVPNVNSVQWPRLNP 517

Query: 73  TGKKIAFLEV 82
             K + +L +
Sbjct: 518 NEKSLHYLHI 527


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 1.8
 Identities = 15/70 (21%), Positives = 27/70 (38%)

Query: 13  NQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRK 72
           N+ G  H      +VD     + TT  ++  + V ID  +SF +      N     +   
Sbjct: 458 NKYGVCHADDAYMVVDTPFLASTTTTNDIKMQKVLIDFWVSFVNNGVPNVNSVQWPRLNP 517

Query: 73  TGKKIAFLEV 82
             K + +L +
Sbjct: 518 NEKSLHYLHI 527


>AY569714-1|AAS86667.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 63  NIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
           NIE      KT KK A     + ++ ++    S  H++Y
Sbjct: 196 NIEKSENETKTCKKYAISSNSLGSRSRSFQRTSSCHSRY 234


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1
          alpha protein.
          Length = 461

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 44 RGVSIDLSLSFYSAAK 59
          RG++ID++L  +  AK
Sbjct: 69 RGITIDIALWKFETAK 84


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 32  TYALTTNENVDTRGVSIDLSLSFYSAAKEGDNI 64
           T   T N  +   G+S    L+FY  +  G+ +
Sbjct: 244 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKV 276


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.4 bits (38), Expect = 9.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)

Query: 32  TYALTTNENVDTRGVSIDLSLSFYSAAKEGDNI 64
           T   T N  +   G+S    L+FY  +  G+ +
Sbjct: 244 TLFYTVNIIIPCMGISFLTVLTFYLPSDSGEKV 276


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.361 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,077
Number of Sequences: 429
Number of extensions: 792
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of query: 104
length of database: 140,377
effective HSP length: 49
effective length of query: 55
effective length of database: 119,356
effective search space:  6564580
effective search space used:  6564580
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)