Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000668-TA|BGIBMGA000668-PA|IPR006683|Thioesterase
superfamily
(104 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04290.1 68414.m00420 thioesterase family protein contains Pf... 76 5e-15
At3g16175.1 68416.m02042 thioesterase family protein contains Pf... 48 2e-06
At2g29590.1 68415.m03593 thioesterase family protein contains Pf... 48 2e-06
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 26 4.2
At3g52190.1 68416.m05731 transducin family protein / WD-40 repea... 26 5.5
At3g25680.1 68416.m03196 expressed protein 25 7.3
At4g36120.1 68417.m05141 expressed protein 25 9.6
At1g09710.1 68414.m01090 myb family transcription factor contain... 25 9.6
>At1g04290.1 68414.m00420 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein; EST
gb|T45093 comes from this gene
Length = 155
Score = 75.8 bits (178), Expect = 5e-15
Identities = 38/101 (37%), Positives = 59/101 (58%), Gaps = 1/101 (0%)
Query: 1 MVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKE 60
+V ++ P LN LHGG A LVD I + + T GVS+++++S+ AA
Sbjct: 49 IVCSMKIPPHLLNAGKFLHGGATATLVDLIGSAVIYT-AGASHSGVSVEINVSYLDAAFL 107
Query: 61 GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
+ IE+E+K + GK +A + VE+R K +++A GRHTKY
Sbjct: 108 DEEIEIESKALRVGKAVAVVSVELRKKTTGKIIAQGRHTKY 148
>At3g16175.1 68416.m02042 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 157
Score = 47.6 bits (108), Expect = 2e-06
Identities = 27/97 (27%), Positives = 54/97 (55%), Gaps = 7/97 (7%)
Query: 1 MVTEFQVGPEHLNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKE 60
+VT+ VG + G+ + G I ++D+I A+ ++ +S+DL+ SFYS AK
Sbjct: 48 LVTDHVVGED-----GSWNAGVITAVMDSIGASAVYSSGG--GLHISVDLNSSFYSTAKI 100
Query: 61 GDNIEVEAKTRKTGKKIAFLEVEVRNKDKNQVLASGR 97
+ +E+EA+ + + +E+R + +++A+GR
Sbjct: 101 HETVEIEARVNGSNGGLKSAVIEIRRETSGEIIATGR 137
>At2g29590.1 68415.m03593 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 158
Score = 47.6 bits (108), Expect = 2e-06
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 3/94 (3%)
Query: 9 PEHLNQRG-TLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVE 67
P L R L G IA+LVD + AL E + VS+D+S++F S AK G+ +E+
Sbjct: 60 PLRLTDRDKNLANGAIANLVDEVGG-ALVHGEGLPM-SVSVDMSIAFLSKAKLGEELEIT 117
Query: 68 AKTRKTGKKIAFLEVEVRNKDKNQVLASGRHTKY 101
++ V VRNK +++A GRH+ +
Sbjct: 118 SRLLGERGGYKGTIVVVRNKMTGEIIAEGRHSMF 151
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 12 LNQRGT-LHGGFIAHLVDAISTYALTTNENVDTRGV-SIDLSLSF 54
+N RG L GFI+HL A+++ +T +DT V S DL++ F
Sbjct: 16 INFRGADLRNGFISHLAGALTSAGIT--YYIDTEEVPSEDLTVLF 58
>At3g52190.1 68416.m05731 transducin family protein / WD-40 repeat
family protein similar to St12p protein (GI:166878)
{Arabidopsis thaliana}; contains Pfam profile: PF00400
WD domain, G-beta repeat
Length = 398
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Query: 30 ISTYALTTNENVDTRGVSIDLSLSF-YSAAKEGDNIEVEAKTRKTGKKIAFLEVEVRNKD 88
+ST + +EN++ S D + F + AA+ GD V T KK+ F ++ +
Sbjct: 199 LSTLERSGDENIELCRFSKDGTKPFLFCAAQRGDTPMVNVYDISTWKKLGFKKLSRKTAS 258
Query: 89 KNQVLASGRH 98
V G++
Sbjct: 259 TMAVSLDGKY 268
>At3g25680.1 68416.m03196 expressed protein
Length = 558
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Query: 12 LNQRGTLHGGFIAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGD 62
+N + L GF +++ IS T + +DT+ ++ D++L F+ GD
Sbjct: 295 VNWKAQLECGFHPEIMEEISR---TKVDYIDTKNINPDMALGFFLDFLMGD 342
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 65 EVEAKTRKTGKKIAFLEVEVRNKDKNQVLAS 95
E E K +A EVE+RN++KN L S
Sbjct: 238 EKEISYLKYDLHVASKEVEIRNEEKNMSLKS 268
>At1g09710.1 68414.m01090 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 689
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 23 IAHLVDAISTYALTTNENVDTRGVSIDLSLSFYSAAKEGDNIEVEAKTRKTGKKIAF 79
IAH+ ++Y L+ ++ +D V L+++ A EG E+ G I F
Sbjct: 115 IAHVKVMAASYVLSESDILDDSTVEAPLTINIPYALPEGSQEPSESPWSSRGMNINF 171
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.132 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,746
Number of Sequences: 28952
Number of extensions: 74812
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 157
Number of HSP's gapped (non-prelim): 8
length of query: 104
length of database: 12,070,560
effective HSP length: 71
effective length of query: 33
effective length of database: 10,014,968
effective search space: 330493944
effective search space used: 330493944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 52 (25.0 bits)
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