GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000667-TA|BGIBMGA000667-
PA|IPR004825|Insulin/IGF/relaxin, IPR004824|Bombyxin,
IPR003234|Insulin-related peptide
         (131 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   2.9  
SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar...    24   8.9  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 80  ISAGDLSSWPGLSSQYAKTRAFALAEKSKRGPGLVD 115
           IS  D ++W GL   YA++  +  A K+     ++D
Sbjct: 679 ISPKDTNAWSGLGEAYARSGRYVSALKAFNRASILD 714



 Score = 24.6 bits (51), Expect = 5.1
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 36 VHDKELKIEENPRVY---CGRHLANARMVLCYDTVEKRAQS---YLDANIISAGDLSSWP 89
          V + EL IE++ +        + AN  + + Y + ++ ++S   YLDA  I    + +W 
Sbjct: 15 VKNYELAIEQSKKALSFDANNYNANVFLGVAYFSTKQLSESKEAYLDAIKIDEKAVLAWQ 74

Query: 90 GLSSQYAKT 98
          GL + Y  T
Sbjct: 75 GLWNLYEST 83


>SPAC3G9.02 |oar2||3-oxoacyl-[acyl-carrier-protein] reductase Oar2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 23.8 bits (49), Expect = 8.9
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 4/62 (6%)

Query: 27  IVVALVSADVHDKELK-IEENPRVYCGRHLANA-RMVLCYDTVEKRAQSYLDANIISAGD 84
           + +A V +D+  K LK I E+  +    H A   +  LC  T EK   S +  N++SA  
Sbjct: 55  LTIADVQSDM--KNLKSIFESVEIDTVVHAAGVLQSSLCVRTSEKEIDSIICTNLVSAIK 112

Query: 85  LS 86
           LS
Sbjct: 113 LS 114


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 563,818
Number of Sequences: 5004
Number of extensions: 20192
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50
Number of HSP's gapped (non-prelim): 3
length of query: 131
length of database: 2,362,478
effective HSP length: 66
effective length of query: 65
effective length of database: 2,032,214
effective search space: 132093910
effective search space used: 132093910
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)