GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000667-TA|BGIBMGA000667-
PA|IPR004825|Insulin/IGF/relaxin, IPR004824|Bombyxin,
IPR003234|Insulin-related peptide
         (131 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containi...    28   1.8  
At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identica...    27   4.1  
At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp...    27   5.4  
At2g06020.1 68415.m00658 myb family transcription factor contain...    26   7.1  
At1g31720.1 68414.m03892 expressed protein                             26   7.1  
At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) simil...    26   9.4  

>At5g55740.1 68418.m06948 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 830

 Score = 28.3 bits (60), Expect = 1.8
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 7/84 (8%)

Query: 22  LLYFLIVVA-LVSADVHDKELKIEENPRVYCGRHLANARMVLCYDTVEKRAQ--SYLDAN 78
           L Y  + +A L+SA    + LK+ +  + YC RH   + +VL    ++  A+  S +DA 
Sbjct: 371 LKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLASTVMDMYAKCGSIVDAK 430

Query: 79  IISAG----DLSSWPGLSSQYAKT 98
            +       DL  W  L + YA++
Sbjct: 431 KVFDSTVEKDLILWNTLLAAYAES 454


>At3g50000.1 68416.m05467 casein kinase II alpha chain 2 identical
           to casein kinase II, alpha chain 2 (CK II) [Arabidopsis
           thaliana] SWISS-PROT:Q08466
          Length = 403

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 66  TVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFALAEKSKRG 110
           TV  +A+ Y D N+I   D   +  L+ Q+ +   + +  K  RG
Sbjct: 69  TVMSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRG 113


>At2g43960.1 68415.m05466 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein contains Pfam profile: PF01805
           surp module
          Length = 442

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 9/10 (90%), Positives = 10/10 (100%)

Query: 111 PGLVDECCLK 120
           PGLVD+CCLK
Sbjct: 87  PGLVDQCCLK 96


>At2g06020.1 68415.m00658 myb family transcription factor contains
          Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 301

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 13/30 (43%), Positives = 14/30 (46%)

Query: 44 EENPRVYCGRHLANARMVLCYDTVEKRAQS 73
          EENP  Y   H   A MVL    +E   QS
Sbjct: 14 EENPSTYVHHHTKKASMVLSEQEIEVILQS 43


>At1g31720.1 68414.m03892 expressed protein
          Length = 194

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 58  ARMVLCYDTVEKRAQSYLDANIISAGDLSSWPGLSSQYAKTRAFAL 103
           A   LC     ++A++ L A +   G    W G S    + RAF L
Sbjct: 28  AAFFLCLSAEFQKAKALLRAQVFLKGKDLKWDGESCYLPENRAFGL 73


>At3g14070.1 68416.m01777 cation exchanger, putative (CAX9) similar
           to sodium/calcium exchanger protein [Mus musculus]
           gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 643

 Score = 25.8 bits (54), Expect = 9.4
 Identities = 11/20 (55%), Positives = 16/20 (80%)

Query: 27  IVVALVSADVHDKELKIEEN 46
           +VV +VS  V DKE+KI++N
Sbjct: 222 VVVGIVSLCVADKEVKIDKN 241


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.137    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,112
Number of Sequences: 28952
Number of extensions: 103851
Number of successful extensions: 295
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 290
Number of HSP's gapped (non-prelim): 6
length of query: 131
length of database: 12,070,560
effective HSP length: 74
effective length of query: 57
effective length of database: 9,928,112
effective search space: 565902384
effective search space used: 565902384
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)