Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (263 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)                 29   5.1  
SB_39452| Best HMM Match : efhand (HMM E-Value=0.38)                   29   5.1  
SB_53254| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.0  
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)            28   9.0  

>SB_43494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 153 VALKYVIDFATSKVSQKMAHRLKVCTNSKLLH 184
           V L +++DFA S V +     +++C  +++LH
Sbjct: 339 VTLSHLVDFAHSNVFKSSVKNMEICCRNRVLH 370


>SB_33785| Best HMM Match : DUF23 (HMM E-Value=8.2e-36)
          Length = 338

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 150 NVPVALKYVIDFATSKVSQKMAHRLKVCTNSKLLHTQTDVDCLPTLYGGKLELREMIEYT 209
           N+   +   +D       +K   R+ V +N+ L +      C+P L   KL  + +IE+ 
Sbjct: 48  NITKRMPLFVDITADVKGEKSKARVPVVSNAHLYYPIKYAICVPPLRSEKLTAKRLIEFV 107

Query: 210 K 210
           +
Sbjct: 108 E 108


>SB_39452| Best HMM Match : efhand (HMM E-Value=0.38)
          Length = 129

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 187 TDVDCLPTLYGGKLELREMIEYTKQILKEQKE 218
           TD+  LP    G ++L E+IE  K ILK +K+
Sbjct: 84  TDITNLPEHEYGHVDLNELIETIKGILKAEKQ 115


>SB_53254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 198 GKLELREMIEYTKQILKEQKENVLALDN 225
           GK  +++ +E T+ ILKE K+ V +LD+
Sbjct: 4   GKERIKKSLESTQAILKELKDEVKSLDD 31


>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
          Length = 647

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 192 LPTLYGGKLELREMIEYTKQILKEQKENVLALDNMEILS 230
           LPT  G K E+     Y K IL E+ E  L  DN+EI S
Sbjct: 474 LPTAMGRKREVETPPNYKKVILIEKTEENLP-DNIEITS 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,679,539
Number of Sequences: 59808
Number of extensions: 302363
Number of successful extensions: 719
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 16,821,457
effective HSP length: 81
effective length of query: 182
effective length of database: 11,977,009
effective search space: 2179815638
effective search space used: 2179815638
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)