Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(263 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38370.1 68415.m04714 expressed protein 31 0.60
At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative / poly... 30 1.4
At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR... 29 2.4
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 29 3.2
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 29 4.2
At5g51270.1 68418.m06356 protein kinase family protein contains ... 28 7.3
At5g06970.1 68418.m00789 expressed protein 28 7.3
At4g26450.1 68417.m03805 expressed protein 28 7.3
At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subuni... 28 7.3
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 27 9.7
At1g79830.1 68414.m09326 expressed protein weak similarity to TA... 27 9.7
At1g73860.1 68414.m08552 kinesin motor protein-related similar t... 27 9.7
>At2g38370.1 68415.m04714 expressed protein
Length = 522
Score = 31.5 bits (68), Expect = 0.60
Identities = 13/62 (20%), Positives = 32/62 (51%)
Query: 18 IEKAENDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQGKFNAT 77
++K + + T K V+ EA+ + ++K ++ + +R+W +NG + + N +
Sbjct: 331 LKKVDEAAQEIETSKRVLEEAVERVDAANASKIEAEEALRKWRSENGQRRRLSSSVNNTS 390
Query: 78 RF 79
+F
Sbjct: 391 KF 392
>At5g47730.1 68418.m05897 SEC14 cytosolic factor, putative /
polyphosphoinositide-binding protein, putative similar
to polyphosphoinositide binding protein SEC14 homolog
Ssh1p (GI:2739044) {Glycine max}
Length = 341
Score = 30.3 bits (65), Expect = 1.4
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 34 VVAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYE 93
V EAI E +E E+ L+ E + Q +N+ G+F R W++C+AH ++ E
Sbjct: 4 VSEEAIDEFQELMDQVEEPLKKTYERVHQGYLRENL--GRFLKARD--WNVCKAHTMLVE 59
Query: 94 SL 95
L
Sbjct: 60 CL 61
>At1g27170.1 68414.m03310 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1544
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 187 TDVDCLPTLYGGKLELREMIEYTKQILKEQKENVLALDNMEILSTRG 233
+D+ LP G L+E++ +K E++ L N+EILS RG
Sbjct: 912 SDLSVLPENIGAMTSLKELL-LDGTAIKNLPESINRLQNLEILSLRG 957
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 29.1 bits (62), Expect = 3.2
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 178 TNSKLLHTQTDVDCLPT-LYGGKLELREMIEYTKQILKEQKENVLALDN--MEILSTRGI 234
+N+KL H Q DV L T L + +++ KQ+L+E++E + L N +E+ + I
Sbjct: 955 SNTKLEHLQNDVTELKTRLEVSSSDQQQLETNVKQLLEEKEELAMHLANSLLEMEEEKAI 1014
Query: 235 ISSR 238
SS+
Sbjct: 1015 WSSK 1018
>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) /
1,3-beta-glucan synthase 1 nearly identical to callose
synthase 1 catalytic subunit [Arabidopsis thaliana]
GI:13649388
Length = 1922
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 183 LHTQTDVDCLPTLYGGKLELREMIEYTKQILKEQKEN-VLALDNMEILSTRGII 235
L T+ ++ LP LYG + +IEY + +E K+ V+ L NM L TR I+
Sbjct: 904 LITELNLSALPDLYG---QFVRLIEYLLENREEDKDQIVIVLLNMLELVTRDIM 954
>At5g51270.1 68418.m06356 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 819
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 5/46 (10%)
Query: 181 KLLHTQTDVDCLPTLYGGKLELREMIE-----YTKQILKEQKENVL 221
KL+H + LPT G + + E +E Y +++++E KE +L
Sbjct: 64 KLIHIHPKITTLPTASGNIVSISEELEEVAAAYRQKVMQETKETLL 109
>At5g06970.1 68418.m00789 expressed protein
Length = 1101
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 115 ISGAHITAWNPSDFGRIIKWGEQSLSMRH 143
+SG + W S GRI+ W E++ H
Sbjct: 704 LSGTLVLRWINSQLGRILSWVERAYKQEH 732
>At4g26450.1 68417.m03805 expressed protein
Length = 1248
Score = 27.9 bits (59), Expect = 7.3
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 40 TELRETQSTKEQSLQLMREWIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYESLMDDP 99
TE +Q Q++ L +W QNG+ + + G+F ++R A M V + +
Sbjct: 92 TEYLVSQGVLPQTV-LSSKW--QNGNFRK-QAGEFQSSR----SQEEARMDV-SAPAAEK 142
Query: 100 LNQICGFNHIGDGNGISGAHITAWNPSDFGRIIKWGEQS 138
I G++ G N + G ++ SDFGR W E+S
Sbjct: 143 RRYIDGYSSAGSRNSLKGRRSHRYD-SDFGRSGSWSERS 180
>At4g26430.1 68417.m03803 COP9 signalosome subunit 6 / CSN subunit 6
(CSN6B) identical to COP9 signalosome subunit 6
[Arabidopsis thaliana] GI:17940314, CSN complex subunit
6B [Arabidopsis thaliana] GI:18056667; contains Pfam
profile PF01398: Mov34/MPN/PAD-1 family; supporting cDNA
gi|17940313|gb|AF434762.1|AF434762; identical to cDNA
CSN complex subunit 6B (CSN6B) GI:18056666
Length = 317
Score = 27.9 bits (59), Expect = 7.3
Identities = 25/99 (25%), Positives = 38/99 (38%), Gaps = 7/99 (7%)
Query: 115 ISGAHITAWNPSDFGRIIKWGEQSLSMRHKAVHLINVPVALKYVIDFATSKVSQKMAHRL 174
IS H+ PSD G L+ H A+ ++N + + Y A K
Sbjct: 188 ISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLNSRIRVLYQHIVAMQKGD------- 240
Query: 175 KVCTNSKLLHTQTDVDCLPTLYGGKLELREMIEYTKQIL 213
K C NS L + + LP K ++EY ++L
Sbjct: 241 KPCENSVLRQVSSLLRSLPAAESEKFNENFLMEYNDKLL 279
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 177 CTNSKLLHTQTDVDCLPTLYGGKLELREMIEYTKQILKEQKENVL 221
C+N K + + L GG E E + + ++LK+ K++ L
Sbjct: 1068 CSNKKSAEKDAAAEAIQWLKGGAKESHEQVNHMSKLLKKGKKDHL 1112
>At1g79830.1 68414.m09326 expressed protein weak similarity to TATA
element modulatory factor (TMF) (Swiss-Prot:P82094)
[Homo sapiens]
Length = 927
Score = 27.5 bits (58), Expect = 9.7
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 15 NVTIEKAENDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQGKF 74
N + EN K ++++ +A+ ELR+T S KEQ + G+I+++ Q ++
Sbjct: 546 NEARSELENRLKEAGERESMLVQALEELRQTLSKKEQQAVYREDMF--RGEIEDL-QRRY 602
Query: 75 NATRFSCWDM 84
A+ C ++
Sbjct: 603 QASERRCEEL 612
>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
kinesin-C GB:AAF04841 from [Strongylocentrotus
purpuratus]
Length = 1030
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/45 (26%), Positives = 23/45 (51%)
Query: 18 IEKAENDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQ 62
+++ E +GK+ T KN + E + EL + + + E I+Q
Sbjct: 338 LKELEQEGKVVNTAKNALEERVKELEQMGKEAHSAKNALEEKIKQ 382
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,556,698
Number of Sequences: 28952
Number of extensions: 222958
Number of successful extensions: 647
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 12
length of query: 263
length of database: 12,070,560
effective HSP length: 80
effective length of query: 183
effective length of database: 9,754,400
effective search space: 1785055200
effective search space used: 1785055200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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