Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
(263 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase |Schizosaccharom... 32 0.097
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||... 29 0.69
SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces ... 27 2.8
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 27 2.8
SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces pombe... 27 3.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 27 3.7
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 8.5
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 25 8.5
>SPBPB2B2.11 |||nucleotide-sugar 4,6-dehydratase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 31.9 bits (69), Expect = 0.097
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 155 LKYVIDFAT-SKVSQKMAHRLKVCTNSKLLHTQTDVDCLPTLYGGKLELREMIEY----T 209
+ ++I+FA S V + L T + +L TQ ++C+ L G K ELR + + T
Sbjct: 91 ITHIINFAAESSVDRSFIDPLYF-TKNNILSTQNLLECVRILLGKKEELRNRLNFVHVST 149
Query: 210 KQILKEQKENVLALDNMEILSTRGIISSR 238
++ EQ EN + ++ T +S+
Sbjct: 150 DEVYGEQDENASVDEKSKLNPTSPYAASK 178
>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
3|||Manual
Length = 264
Score = 29.1 bits (62), Expect = 0.69
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 98 DPLNQICGFNHIGDGNGISGAHITAWN---PSDFGRIIKWGEQSLSMRHKAVHLINVPV 153
+P N + + + S A + W P++F R I W Q M K+ H N+P+
Sbjct: 206 NPENSVTSLDLVEPPENYSWAPQSDWTFVPPNEFRRFILWSPQPPKMNRKSSHGSNLPL 264
>SPAC3H8.02 |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 444
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 14 WNVTI-EKAENDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQ 71
W T E +N+ + LKNV A ++ K+ ++ +WI NGD+ V+Q
Sbjct: 328 WRYTYPEPCQNEAE---ALKNVEARKSLRAKKDAIAKQYE-EVTMDWILNNGDMAEVKQ 382
>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
Mok12|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2352
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 53 LQLMREWIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYESLMD 97
L+L+ +W + N G+ N T + W M R + Y+ D
Sbjct: 598 LKLIGKWTHEGTFPGNELYGESNPTTWGLWSMIRGPLAPYQKFSD 642
>SPBC713.03 |||D-lactate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 26.6 bits (56), Expect = 3.7
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 90 LVYESLMDD----PLNQICGFNHIGDGN 113
L+ +L+DD P+ + GF H+GDGN
Sbjct: 421 LIEFNLLDDTPEHPVIDVVGFGHMGDGN 448
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 19 EKAENDGKMGRTLKNVVAEAI-TELRETQSTKEQSLQLMREWIEQNGDIKN 68
E E + K G + VA+ + TE+ E + E ++ E+IE +G+ N
Sbjct: 8 ETVEFNSKNGPGQRGTVADNVDTEMGEFEDAYEDEIESEEEYIEADGEKDN 58
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 4.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 41 ELRETQSTKEQSLQLMREWIEQNGDIKNVRQ 71
EL E S++++ + ++ +E N D + VRQ
Sbjct: 1754 ELEEFMSSEQERIGFLKSQLESNNDSEEVRQ 1784
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 58 EWIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYESL 95
+W E NG + V+ + TR W+ H+ + L
Sbjct: 892 DWEEYNGGLTKVQASNWTGTRRQGWEGHHIHVQYWSDL 929
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 25.4 bits (53), Expect = 8.5
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 163 TSKVSQKMAHRLKVCTNSKLLHTQTDVDCLPTLYGGKLELREMIEYTKQILKEQKENVLA 222
T +V +A R K K + VD T G ++LR + +T +EQ E LA
Sbjct: 58 TERVQHAVAERKKWKKFGKEAGKNSGVDARTTSVGENVQLRLQLGWTTTKEEEQDEAALA 117
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,061,710
Number of Sequences: 5004
Number of extensions: 42001
Number of successful extensions: 115
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 9
length of query: 263
length of database: 2,362,478
effective HSP length: 71
effective length of query: 192
effective length of database: 2,007,194
effective search space: 385381248
effective search space used: 385381248
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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