GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (263 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0658 - 19755757-19756986                                         37   0.019
03_01_0510 + 3841630-3844089,3844235-3844358,3844641-3844786,384...    36   0.033
02_05_0144 + 26258841-26258948,26259099-26259212,26259335-262595...    32   0.54 
08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999           30   2.2  
06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615           30   2.2  
02_01_0642 - 4803464-4805665,4806231-4806320                           29   2.9  

>08_02_0658 - 19755757-19756986
          Length = 409

 Score = 36.7 bits (81), Expect = 0.019
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 59  WIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYESL---MDDPLNQICGFNHIG 110
           W+  NGD++++ +G+    R   WD    ++L+   +   MD  +   CGF H G
Sbjct: 348 WVAGNGDVESIERGERREARPGQWDKFGCYLLLESFVLRRMDGSVALTCGFRHTG 402


>03_01_0510 +
           3841630-3844089,3844235-3844358,3844641-3844786,
           3844861-3844958,3845313-3845502
          Length = 1005

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 23/82 (28%), Positives = 44/82 (53%), Gaps = 2/82 (2%)

Query: 16  VTIEKAENDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQGKFN 75
           + IEK   D K+ R  KN + E +T+L  +    +   +L  E++E   D+  ++  K  
Sbjct: 367 IHIEKVAGD-KVVRDEKNKIKEELTDLCFSDPL-DLHRRLHHEYLETESDLFKLKLQKVV 424

Query: 76  ATRFSCWDMCRAHMLVYESLMD 97
           A+RF   D+CR+++ + E  ++
Sbjct: 425 ASRFVLPDICRSYIDIIERQLE 446


>02_05_0144 +
           26258841-26258948,26259099-26259212,26259335-26259556,
           26259660-26259734,26259827-26259943,26260046-26260296,
           26260833-26260908,26261045-26261131,26261216-26261401
          Length = 411

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 7/150 (4%)

Query: 86  RAHMLVYESLMDDPLNQICGFNHIGDGNGISGAHITAWNPSDFGRIIKWGEQSLSMRHKA 145
           R  M   E+L+ +    I G   +  G G  G+          G+I+  G+ + ++R+K+
Sbjct: 187 RGVMYATEALLTEYSESISGSTFVIQGLGNVGSWAAKLIHQKGGKIVAVGDVTGAIRNKS 246

Query: 146 VHLINVPVALKYVIDFATSKVSQKMAHRLKVCTNSKLLHTQTDVDCLPTLYGGKLELREM 205
              I++P  LK+     +   S +  +  +V   ++LL  + DV  +P   GG L     
Sbjct: 247 G--IDIPALLKH----RSEGGSLEDFYGAEVMDAAELLVHECDV-LVPCALGGVLNRENA 299

Query: 206 IEYTKQILKEQKENVLALDNMEILSTRGII 235
            E   + + E   +    +  EIL+ +G+I
Sbjct: 300 AEVKARFIIEGANHPTDTEADEILAKKGVI 329


>08_01_0513 + 4475696-4477606,4478479-4478496,4478832-4478999
          Length = 698

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/63 (26%), Positives = 32/63 (50%)

Query: 177 CTNSKLLHTQTDVDCLPTLYGGKLELREMIEYTKQILKEQKENVLALDNMEILSTRGIIS 236
           C+  KL  T   +  LP+  G    L+E++ Y  ++  E  + + A+ ++ +L  R + S
Sbjct: 435 CSLRKLHITHYYISKLPSWMGSLANLKELLLYFYRMRPEDVDILEAIPSLVLLRVRTLYS 494

Query: 237 SRG 239
           S G
Sbjct: 495 SNG 497


>06_01_0524 - 3794723-3795238,3796209-3796378,3797129-3797615
          Length = 390

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/53 (30%), Positives = 27/53 (50%)

Query: 49  KEQSLQLMREWIEQNGDIKNVRQGKFNATRFSCWDMCRAHMLVYESLMDDPLN 101
           K +S Q M +W E   D+++ R G+   +     D   AH++V +  MD  L+
Sbjct: 279 KSKSEQSMDQWSEIPSDVESSRDGRRYISGEELSDADSAHIVVMDKYMDSLLS 331


>02_01_0642 - 4803464-4805665,4806231-4806320
          Length = 763

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 15  NVTIEKAENDGKMGRTLKNV--VAEAITELRETQSTKEQSLQLMREWIEQNGDIKNVRQG 72
           ++ I   E D ++  T + +  V   + EL++   +KE  L  +R  ++         Q 
Sbjct: 478 SIQIAVQEKDSELSETQRRLAEVNSEVVELKQLLDSKEDQLVQVRTELQDKEQHIQTLQN 537

Query: 73  KFNATRFSC 81
           K ++ +FSC
Sbjct: 538 KLDSMKFSC 546


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,713,924
Number of Sequences: 37544
Number of extensions: 266091
Number of successful extensions: 646
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 642
Number of HSP's gapped (non-prelim): 6
length of query: 263
length of database: 14,793,348
effective HSP length: 81
effective length of query: 182
effective length of database: 11,752,284
effective search space: 2138915688
effective search space used: 2138915688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)