GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (263 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF519360-1|ABP68469.1|  499|Anopheles gambiae LRIM1 protein.           26   1.3  
EF519355-1|ABP68464.1|  506|Anopheles gambiae LRIM1 protein.           26   1.3  
EF519349-1|ABP68458.1|  486|Anopheles gambiae LRIM1 protein.           25   2.2  
EF519348-1|ABP68457.1|  503|Anopheles gambiae LRIM1 protein.           25   2.2  
AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450 CY...    23   6.8  
AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative transcrip...    23   9.0  

>EF519360-1|ABP68469.1|  499|Anopheles gambiae LRIM1 protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 19  EKAENDGKMGRTLKNVVAEAITELRETQSTKEQS-LQLMREWIEQNGDIKNVRQGKFNAT 77
           E+  N  +    L   + +A+ ++    +T+EQS LQL+R  +++  ++  V Q      
Sbjct: 396 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQSVQNN 454

Query: 78  RFSCWDM 84
               WDM
Sbjct: 455 AIRDWDM 461


>EF519355-1|ABP68464.1|  506|Anopheles gambiae LRIM1 protein.
          Length = 506

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)

Query: 19  EKAENDGKMGRTLKNVVAEAITELRETQSTKEQS-LQLMREWIEQNGDIKNVRQGKFNAT 77
           E+  N  +    L   + +A+ ++    +T+EQS LQL+R  +++  ++  V Q      
Sbjct: 396 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQSVQNN 454

Query: 78  RFSCWDM 84
               WDM
Sbjct: 455 AIRDWDM 461


>EF519349-1|ABP68458.1|  486|Anopheles gambiae LRIM1 protein.
          Length = 486

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 19  EKAENDGKMGRTLKNVVAEAITELRETQSTKEQS-LQLMREWIEQNGDIKNVRQGKFNAT 77
           E+  N  +    L   + +A+  +    +T+EQS LQL+R  +++  ++  V Q      
Sbjct: 396 EQVSNGRRAHAELDGTLXQAVGXIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQSVQNN 454

Query: 78  RFSCWDM 84
               WDM
Sbjct: 455 AIRDWDM 461


>EF519348-1|ABP68457.1|  503|Anopheles gambiae LRIM1 protein.
          Length = 503

 Score = 25.0 bits (52), Expect = 2.2
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 19  EKAENDGKMGRTLKNVVAEAITELRETQSTKEQS-LQLMREWIEQNGDIKNVRQGKFNAT 77
           E+  N  +    L   + +A+  +    +T+EQS LQL+R  +++  ++  V Q      
Sbjct: 396 EQVSNGRRAHAELDGTLXQAVGXIELQHATEEQSPLQLLRAIVKRYEEM-YVEQQSXQNN 454

Query: 78  RFSCWDM 84
               WDM
Sbjct: 455 AIRDWDM 461


>AY062207-1|AAL58568.1|  504|Anopheles gambiae cytochrome P450
           CYP6S2 protein.
          Length = 504

 Score = 23.4 bits (48), Expect = 6.8
 Identities = 11/42 (26%), Positives = 21/42 (50%)

Query: 23  NDGKMGRTLKNVVAEAITELRETQSTKEQSLQLMREWIEQNG 64
           ND  +     NVV + I    E    ++  +QL+ + +++NG
Sbjct: 240 NDKDVADFFMNVVRDTIRYRAENGVRRDDFMQLLIDMMQENG 281


>AJ438610-4|CAD27476.1|  593|Anopheles gambiae putative
           transcription factor protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 36  AEAITELRETQSTKEQSLQLMREWIEQN-------GDIKNVRQGKFNATRFSCWDMCRAH 88
           A+ IT+   + S    +L  + EW+ QN       GD  +    K   + F C ++  A 
Sbjct: 122 ADLITQAISSASDSRLTLSQIYEWMVQNVPYFKDKGDSNSSAGWKVGGSFFVCVELDPAQ 181

Query: 89  MLVYESL 95
            +  +SL
Sbjct: 182 FIAAQSL 188


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,688
Number of Sequences: 2123
Number of extensions: 8535
Number of successful extensions: 70
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 69
Number of HSP's gapped (non-prelim): 6
length of query: 263
length of database: 516,269
effective HSP length: 63
effective length of query: 200
effective length of database: 382,520
effective search space: 76504000
effective search space used: 76504000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)