GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000666-TA|BGIBMGA000666-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal,
IPR011074|Phosphatidylinositol transfer protein-like, N-terminal
         (263 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical ...    32   0.36 
AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.      32   0.36 
Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical pr...    29   2.6  
Z67879-4|CAB54185.1|  297|Caenorhabditis elegans Hypothetical pr...    29   3.4  
U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>AL021180-1|CAA15980.1|  383|Caenorhabditis elegans Hypothetical
           protein Y44F5A.1 protein.
          Length = 383

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 56  MREWIEQNGDIKNVR---QGKFNATR----FSCWDMCRAHMLVYESLMDDPLNQICGFNH 108
           +R+W EQ+ DI +++   +    AT        +D+ +A + +   LM   L  +CG N 
Sbjct: 138 IRKWQEQDEDINDLKVDVKSNLLATSSDGTLGAYDLRKAKLKMRSELMHSELYSVCGTNR 197

Query: 109 IGDGNGISGAHITAWNPSDFGRIIKWGEQSLSM 141
                G  G ++  +N +++G +++  E    M
Sbjct: 198 SVYVGGEDG-YVEVFNLNEYGNLLERVESGFEM 229


>AF303252-1|AAG50210.1|  383|Caenorhabditis elegans 3E324 protein.
          Length = 383

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 56  MREWIEQNGDIKNVR---QGKFNATR----FSCWDMCRAHMLVYESLMDDPLNQICGFNH 108
           +R+W EQ+ DI +++   +    AT        +D+ +A + +   LM   L  +CG N 
Sbjct: 138 IRKWQEQDEDINDLKVDVKSNLLATSSDGTLGAYDLRKAKLKMRSELMHSELYSVCGTNR 197

Query: 109 IGDGNGISGAHITAWNPSDFGRIIKWGEQSLSM 141
                G  G ++  +N +++G +++  E    M
Sbjct: 198 SVYVGGEDG-YVEVFNLNEYGNLLERVESGFEM 229


>Z73899-4|CAA98076.1|  400|Caenorhabditis elegans Hypothetical
           protein ZK829.6 protein.
          Length = 400

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 150 NVPVALKYVIDFATSK--VSQKMAHRLKVCTNSKLLHTQTDVDCLPTLYGG-KLELREMI 206
           ++ + L +VI   T+   V + M   ++     K+ HT+ D    P L GG  LELR+  
Sbjct: 137 DIMMQLDHVIHVLTTGDIVKEAMHRSIRWLDRCKVAHTRDDQAMFPILQGGLNLELRK-- 194

Query: 207 EYTKQILKEQKENV 220
           E  K++ K  K  +
Sbjct: 195 ECAKEMAKRAKVGI 208


>Z67879-4|CAB54185.1|  297|Caenorhabditis elegans Hypothetical
           protein C05E7.1 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 136 EQSLSMRHKAVHLINVPVALKYVIDFATSKVSQKMAHRLKVCTNSKLLHTQTDVDCLPTL 195
           ++SLS+R++ V + N  + L  +  FA+++      HR + C   K  H    ++     
Sbjct: 13  DRSLSLRNRFVMITNCLILLAILFGFASTQYLNLNLHRHQSCAWRKSSHWNRKIE----F 68

Query: 196 YGGKLELREMIEYTKQ 211
            GG  +   +++ T+Q
Sbjct: 69  QGGHSDSGALLKSTEQ 84


>U40028-2|AAY55874.1| 1200|Caenorhabditis elegans Hypothetical
           protein T05A7.11 protein.
          Length = 1200

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)

Query: 63  NGDIKNVRQGKFNATRFSCWDMCRAHMLVYESLMDD-PLNQICG 105
           N  +K +   K N+ +   WD+  AH ++ E L+ D    +ICG
Sbjct: 805 NVRVKKLEVKKMNSLKH--WDLTNAHKIIMEELIGDYKFLEICG 846


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,715,694
Number of Sequences: 27539
Number of extensions: 228614
Number of successful extensions: 628
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 627
Number of HSP's gapped (non-prelim): 5
length of query: 263
length of database: 12,573,161
effective HSP length: 80
effective length of query: 183
effective length of database: 10,370,041
effective search space: 1897717503
effective search space used: 1897717503
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)