Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000665-TA|BGIBMGA000665-PA|undefined
(205 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62110.1 68418.m07796 hypothetical protein 31 0.73
At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pf... 31 0.73
At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pf... 31 0.73
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 28 5.1
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 28 5.1
At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10... 28 5.1
At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10... 28 5.1
At4g39060.1 68417.m05532 F-box family protein low similarity to ... 27 6.8
At3g21720.1 68416.m02740 isocitrate lyase, putative similar to i... 27 6.8
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 27 9.0
>At5g62110.1 68418.m07796 hypothetical protein
Length = 691
Score = 30.7 bits (66), Expect = 0.73
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 12/95 (12%)
Query: 35 EGIANIP-NNVLMNLHWVT-TAVMPEDYANITLSNIDVVNNFGLNYNLNEEQLNALAARV 92
E I N+ NNV N + T ++ + N T+ +++ +N +N N NEE LN++ A
Sbjct: 530 EDINNLSINNVNDNSNEETLNSIAANNEMNFTILDVNTINQ--VNGNSNEETLNSIVA-- 585
Query: 93 REDYAGKEPEDYTYYDLTALNQILCAFNKSEIERI 127
++T D+ +NQ+ FN+ + I
Sbjct: 586 ------NSEINFTTLDVNTINQVDNNFNEETLNSI 614
>At3g15880.2 68416.m02009 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1135
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ +NA L W K+ NLLGK +P +
Sbjct: 790 GGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQ 825
>At3g15880.1 68416.m02008 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (7 copies)
Length = 1137
Score = 30.7 bits (66), Expect = 0.73
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ +NA L W K+ NLLGK +P +
Sbjct: 790 GGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQ 825
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ NA L W +N N GK +P +
Sbjct: 769 GNAILALASNAIHLLWKWQRNDRNATGKATASLPPQ 804
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ NA L W +N N GK +P +
Sbjct: 769 GNAILALASNAIHLLWKWQRNDRNATGKATASLPPQ 804
>At1g15750.2 68414.m01890 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ NA L W +N N GK +P +
Sbjct: 780 GNAILALASNAIHLLWKWQRNERNATGKATASLPPQ 815
>At1g15750.1 68414.m01889 WD-40 repeat family protein contains 10
WD-40 repeats (PF00400) (1 weak)
Length = 1131
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 152 GFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
G A LA+ NA L W +N N GK +P +
Sbjct: 780 GNAILALASNAIHLLWKWQRNERNATGKATASLPPQ 815
>At4g39060.1 68417.m05532 F-box family protein low similarity to
SKP1 interacting partner 6 [Arabidopsis thaliana]
GI:10716957; contains Pfam profile PF00646: F-box domain
Length = 375
Score = 27.5 bits (58), Expect = 6.8
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 170 NKNIMNLLGKVAECIPKEFLESKKIISNVES 200
NK I+ + G + I K+ +ESKK NVES
Sbjct: 183 NKKILPMDGNICVTIKKKNVESKKKKKNVES 213
>At3g21720.1 68416.m02740 isocitrate lyase, putative similar to
isocitrate lyase GI:167144 from [Brassica napus]
Length = 576
Score = 27.5 bits (58), Expect = 6.8
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 2 TPKDIVQCLAHLGKEELSKDAAQFIWQTLVTH 33
T +D+V HL + S + A+ +W+TL +H
Sbjct: 42 TARDVVALRGHLKQGYASNEMAKKLWRTLKSH 73
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 27.1 bits (57), Expect = 9.0
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 94 EDYAGKEPEDYTYYDLTALNQILCAFNKSEIERIHPVAYRETVLMIGKLQNCNPDVMRGF 153
+D AGK D+ +L + A+ K E++ + +E ++G L+ ++G
Sbjct: 289 DDLAGKR--DWEVAELRQTLSMKDAYFK-EMKYENGKLEQENRELLGSLKELQEATIQGS 345
Query: 154 ATLAMDK--NAFGSLENWNKNI-MNLLGKVAE 182
A+ K N F +LEN +KN NL K AE
Sbjct: 346 GNSALSKLKNKFRNLENIHKNCSANLRSKEAE 377
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,838,767
Number of Sequences: 28952
Number of extensions: 185867
Number of successful extensions: 436
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 12
length of query: 205
length of database: 12,070,560
effective HSP length: 78
effective length of query: 127
effective length of database: 9,812,304
effective search space: 1246162608
effective search space used: 1246162608
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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