GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000665-TA|BGIBMGA000665-PA|undefined
         (205 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324...    30   1.2  
03_03_0144 + 14826797-14827435,14827561-14827771,14827861-148281...    29   3.5  

>07_01_0426 +
           3239274-3239386,3239472-3239702,3242516-3242642,
           3242729-3242788,3242868-3242960,3243073-3243369,
           3243450-3243761,3243857-3244114,3244227-3244375,
           3244470-3245102,3245367-3245640,3245736-3245777,
           3246332-3246586,3246700-3246711
          Length = 951

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 9/101 (8%)

Query: 11  AHLGKEE--LSKDAAQFIWQTLVTHHEGIANIPNNVLMNLHWVTTAVMPEDYANITLSNI 68
           AH+ + E  L     +F    + T    +   PN +L+N+HW   AV    Y    L ++
Sbjct: 663 AHMEEFEFYLINGRGEFQQTRIQTDEVDLQTTPNRLLINVHWQQNAV--GQYDTSMLKSL 720

Query: 69  DVVNNFGLNYNLNEEQL---NALAARVREDYAGKEPEDYTY 106
             ++   L    NE+ +     L A ++E+  G  PED  Y
Sbjct: 721 PEIHKLELIPKGNEDSVALHGCLEAFLKEEPLG--PEDMWY 759


>03_03_0144 +
           14826797-14827435,14827561-14827771,14827861-14828155,
           14828285-14828674,14829131-14829208,14829296-14829518
          Length = 611

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 17  ELSKDAAQFIWQTLVTHHEGIANIPNNVL--MNLHWV 51
           ++ K A    WQT +T HEG  ++P  +L  +  +WV
Sbjct: 569 KVEKIANAMRWQTRLTDHEGGPHVPEKILFAVKQYWV 605


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,593,794
Number of Sequences: 37544
Number of extensions: 205420
Number of successful extensions: 433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 2
length of query: 205
length of database: 14,793,348
effective HSP length: 79
effective length of query: 126
effective length of database: 11,827,372
effective search space: 1490248872
effective search space used: 1490248872
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)