Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000665-TA|BGIBMGA000665-PA|undefined
(205 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68) 35 0.055
SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.072
SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.29
SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6) 29 3.6
SB_9654| Best HMM Match : Nop10p (HMM E-Value=2) 29 3.6
SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_22248| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06) 28 6.3
>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
Length = 317
Score = 34.7 bits (76), Expect = 0.055
Identities = 23/107 (21%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 81 NEEQLNALAARVREDYAGKEPEDYTYYDLTALNQILCAFNKSEIERIHPVAYRETVLMIG 140
++EQL AL + G+ +D++ +L Q+L E+ +I +RE +
Sbjct: 5 DKEQLAALVKAAFRKF-GQNVQDWSKDVFASLKQLLAGLESGELAQIAADKFREINQYLC 63
Query: 141 KLQNCNPDVMRGFATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKE 187
++ A + K A+G +E W ++++ L + + +P E
Sbjct: 64 NVKFTGDQKK---ALIVPAKEAYGEVEKWTEDVVQKLCTIVDALPIE 107
>SB_50241| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 34.3 bits (75), Expect = 0.072
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 69 DVVNNFGLN-YNLNEEQLNALAARVREDYAGKEPED 103
D+++NFG + + EE+L AL R RE Y GK PED
Sbjct: 96 DILDNFGFHDFEKTEERLRALRWRWRESYRGK-PED 130
>SB_55495| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 858
Score = 32.3 bits (70), Expect = 0.29
Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 58 EDYANITLSNIDVVNNFGLNYNLNEEQLNALAARVREDYAGKEPEDYTYYDL 109
+DY SN D +N+ GL++ +N +++ L GKE ++ +Y DL
Sbjct: 266 QDYKKFYDSNTDFINSIGLSHEMNLKKMRVLTLM----SIGKETDEISYEDL 313
>SB_31354| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2286
Score = 30.7 bits (66), Expect = 0.89
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 31 VTHHEGIANIPNNVLMNLHWVTTAVMPEDYANIT 64
VTH+ G+ IP N L W++ EDY +T
Sbjct: 1839 VTHNSGMLGIPPNPLKTARWLSELPSDEDYDFLT 1872
>SB_57944| Best HMM Match : OmpH (HMM E-Value=6.6)
Length = 416
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/49 (36%), Positives = 21/49 (42%)
Query: 45 LMNLHWVTTAVMPEDYANITLSNIDVVNNFGLNYNLNEEQLNALAARVR 93
L L V + P D +TL NID V G EQL L +VR
Sbjct: 75 LKKLGRVVLGLEPSDLEKLTLENIDAVAALGKWRGWTVEQLENLKPKVR 123
>SB_9654| Best HMM Match : Nop10p (HMM E-Value=2)
Length = 323
Score = 28.7 bits (61), Expect = 3.6
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 3 PKDIVQCLAHLGKEELSKDAAQFIWQTLVTHHEGIANIPNNVLMNLHWVTTAVMPE 58
P +IV +AHL + S A+ ++L HHEG I N +++A+ PE
Sbjct: 119 PLNIVVVVAHLTIKSSSLKKARCTKESLTIHHEG-TYIYKRFFSNCSQLSSAIGPE 173
>SB_33496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1082
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 159 DKNAFGSLENWNKNIMNLLGKVAECIPKEFLESKKIISNVESSCSVN 205
DK F + NK+ L+GK++E + K+ L K + + + C +
Sbjct: 646 DKKYFLKIPQLNKDQGKLMGKISELVKKQGLARKSVDRSQVNGCQAS 692
>SB_50139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2211
Score = 27.9 bits (59), Expect = 6.3
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Query: 42 NNVLMNLHWVTTAVMPEDYANITLSNIDVVNNFGLNYNLNEEQLNALAARVREDYAGKEP 101
NN N +T + P I+ +N VVNN G N L +R++ +AG+
Sbjct: 1024 NNGPTNTFEITAIMAPTTGVRISQANNTVVNNVGRN----------LVSRLKISFAGETL 1073
Query: 102 EDYTYYDL 109
+D YD+
Sbjct: 1074 QDTNRYDV 1081
>SB_22248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 27.9 bits (59), Expect = 6.3
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 170 NKNIMNLLGKVAECIPKEFLESKKIISNVESSCSV 204
++ ++ L+G + C P + E+ K + N+ CS+
Sbjct: 56 SREVLVLMGSLTSCDPGDITETVKSLKNMNVRCSI 90
>SB_19770| Best HMM Match : LRR_1 (HMM E-Value=1.7e-06)
Length = 239
Score = 27.9 bits (59), Expect = 6.3
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 11/108 (10%)
Query: 94 EDYAGKEPEDYTYYDLTALNQILCAFNKSEIERIHPVAYRETVLMIGKLQNCNPDVMRGF 153
ED E + ++ DLT L + NK I P+ + T+ +L D+ R
Sbjct: 55 EDGQITELKKTSFLDLTKLRGLYLTNNK-----ISPI-FEGTITTCVRLMTV--DLSRNL 106
Query: 154 ATLAMDKNAFGSLENWNKNIMNLLGKVAECIPKEFLESKKIISNVESS 201
K+ F LE+ +NL V EC+ +E E K +S V+ S
Sbjct: 107 LKRVF-KHYFSGLEDLKS--VNLSRNVIECVEREAFEGCKALSKVDFS 151
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.132 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,673,062
Number of Sequences: 59808
Number of extensions: 250105
Number of successful extensions: 568
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 561
Number of HSP's gapped (non-prelim): 11
length of query: 205
length of database: 16,821,457
effective HSP length: 79
effective length of query: 126
effective length of database: 12,096,625
effective search space: 1524174750
effective search space used: 1524174750
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
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