GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000665-TA|BGIBMGA000665-PA|undefined
         (205 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein ...    23   1.6  
AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein ...    23   1.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   2.7  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   8.3  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   8.3  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   8.3  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   8.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.3  

>DQ855483-1|ABH88170.1|  117|Apis mellifera chemosensory protein 2
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 176 LLGKVAECIPKEFLESKKIISNVE 199
           L G   +C P+E  + KK++S+++
Sbjct: 76  LRGACPQCSPEETRQIKKVLSHIQ 99


>AJ973398-1|CAJ01445.1|  117|Apis mellifera hypothetical protein
           protein.
          Length = 117

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/24 (33%), Positives = 16/24 (66%)

Query: 176 LLGKVAECIPKEFLESKKIISNVE 199
           L G   +C P+E  + KK++S+++
Sbjct: 76  LRGACPQCSPEETRQIKKVLSHIQ 99


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 60  YANITLSNIDVVNNFGLNYNLNEEQL 85
           Y+N    N +  NN+  NYN N ++L
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 60  YANITLSNIDVVNNFGLNYNLNEEQL 85
           Y+N    N +  NN+  NYN N ++L
Sbjct: 91  YSNYNNYNNNYNNNYNNNYNNNYKKL 116


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 64  TLSNIDVVNNFGLNYNLNEEQLN 86
           +LSN  + NN    YN N    N
Sbjct: 84  SLSNRTIHNNNNYKYNYNNNNYN 106


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 64  TLSNIDVVNNFGLNYNLNEEQLN 86
           +LSN  + NN    YN N    N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYN 106


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 64  TLSNIDVVNNFGLNYNLNEEQLN 86
           +LSN  + NN    YN N    N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYN 106


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 64  TLSNIDVVNNFGLNYNLNEEQLN 86
           +LSN  + NN    YN N    N
Sbjct: 84  SLSNKTIHNNNNYKYNYNNNNYN 106


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 8.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 64  TLSNIDVVNNFGLNYNLNEEQLN 86
           +LSN  + NN    YN N    N
Sbjct: 317 SLSNKTIHNNNNYKYNYNNNNYN 339


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 62,512
Number of Sequences: 429
Number of extensions: 2586
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 9
length of query: 205
length of database: 140,377
effective HSP length: 55
effective length of query: 150
effective length of database: 116,782
effective search space: 17517300
effective search space used: 17517300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)