Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000664-TA|BGIBMGA000664-PA|IPR008506|Protein of unknown
function DUF788
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    31   0.13 
SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    30   0.22 
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   1.6  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   2.7  
SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    25   8.4  
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       25   8.4  

>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 30.7 bits (66), Expect = 0.13
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 41  IITALFYYENISNWVLFFNVLVLIIHIACYQLMMYISK-PRYLNNTQLLDPG 91
           +  ALF+++N S+ V+    +VL + I  Y  ++Y+   P  L+N  LL  G
Sbjct: 122 VTNALFHFDNSSHMVIRNENIVLPLDIPLYDRIIYVEPVPATLSNKSLLLAG 173


>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase,
          MBOAT |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 29.9 bits (64), Expect = 0.22
 Identities = 14/41 (34%), Positives = 27/41 (65%), Gaps = 4/41 (9%)

Query: 54 WVLFFNVLVLIIHIACYQLMMYISKPR---YLNNTQLLDPG 91
          ++ +F+V++ I+ IAC+++  Y+S P+   Y N  + L PG
Sbjct: 59 FIFYFSVILSILTIACFKI-HYVSSPKHPNYKNIEKYLKPG 98


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 10/25 (40%), Positives = 13/25 (52%), Gaps = 1/25 (4%)

Query: 129 LILPIRVFWLLWTNILGPWFFQEAP 153
           ++ PI +FWL WT    PW     P
Sbjct: 394 IVFPIGIFWLAWTGNY-PWIHWIVP 417


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 8/38 (21%), Positives = 22/38 (57%)

Query: 29  RNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIH 66
           +N+  +A+ F  +   + YY     W++ F ++++++H
Sbjct: 81  KNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVMLH 118


>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 34  AATSFYGIITALFYYENISNWVLFFNVLVLI-IHIACYQLM-MYISK 78
           + +SF+G  T L Y+  ++ W  +  +  +I +H+    LM  Y SK
Sbjct: 195 SGSSFWGACTGLLYFYMVTAWGGYVFITNMIPLHVFVLLLMGRYTSK 241


>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)

Query: 102 EHIKDIVILSSITQVLALINNYFWLLLL-----ILPIRVFWLL 139
           +H+K+I  L S +  L L +NY   LL+       PIR F+++
Sbjct: 61  QHLKEIHYLISASAKLLLASNYLLELLISHNIQFSPIRSFFII 103


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.331    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 645,220
Number of Sequences: 5004
Number of extensions: 24883
Number of successful extensions: 79
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 2,362,478
effective HSP length: 68
effective length of query: 108
effective length of database: 2,022,206
effective search space: 218398248
effective search space used: 218398248
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 51 (24.6 bits)