Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000664-TA|BGIBMGA000664-PA|IPR008506|Protein of unknown
function DUF788
         (176 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)       31   0.53 
SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.92 
SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)                   29   1.6  
SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  

>SB_54685| Best HMM Match : RFX_DNA_binding (HMM E-Value=1.2e-08)
          Length = 510

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/44 (27%), Positives = 27/44 (61%)

Query: 86  QLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLL 129
           ++LD  +  N +GGM  H+K ++  S +  V+A+ ++  + +L+
Sbjct: 225 RILDTVISANFDGGMPIHMKSVLQCSVLVDVIAICDSILYKVLI 268


>SB_1029| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 109 ILSSITQVLALINNYFWLLLLILPIRVFWLLWTNILG 145
           +L  +  VLALIN    L L ++P +V W +W  +LG
Sbjct: 467 LLGRLALVLALINICLGLFLAVVP-QVAWTVWYAVLG 502


>SB_48178| Best HMM Match : RVT_1 (HMM E-Value=0.013)
          Length = 1105

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 76  ISKPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFW 125
           +SK R+ + ++ + P L  NME GM E IK  V+ S  T+   L +  FW
Sbjct: 344 LSKERWKDLSERIQP-LRPNMEAGMKEKIKK-VLASPHTETRELKHRAFW 391


>SB_48110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 88  LDPGLDLNMEGGMGEHI 104
           LDPGLDL +E G+G  +
Sbjct: 373 LDPGLDLGLEPGLGSRL 389


>SB_6361| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 530

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 19  VENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFN 59
           V+N AT   Y N+   AT +  +     +Y N+ N   F+N
Sbjct: 173 VDNKATS--YNNVDKKATFYNNVDKTATFYNNVDNKATFYN 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.331    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,277,622
Number of Sequences: 59808
Number of extensions: 149936
Number of successful extensions: 365
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 30
length of query: 176
length of database: 16,821,457
effective HSP length: 78
effective length of query: 98
effective length of database: 12,156,433
effective search space: 1191330434
effective search space used: 1191330434
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 57 (27.1 bits)