GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000664-TA|BGIBMGA000664-PA|IPR008506|Protein of unknown
function DUF788
         (176 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23940.1 68415.m02858 expressed protein contains 2 transmembr...    54   7e-08
At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620...    45   3e-05
At5g65380.1 68418.m08223 ripening-responsive protein, putative s...    29   1.8  
At3g22710.1 68416.m02865 F-box family protein contains F-box dom...    28   4.1  
At5g63750.1 68418.m08001 IBR domain-containing protein contains ...    27   9.4  

>At2g23940.1 68415.m02858 expressed protein contains 2 transmembrane
           domains; contains Pfam profile PF05620: Protein of
           unknown function (DUF788)
          Length = 173

 Score = 53.6 bits (123), Expect = 7e-08
 Identities = 26/114 (22%), Positives = 62/114 (54%), Gaps = 3/114 (2%)

Query: 20  ENAATVKFYRNMSMAATSFYGIITALFYYENISNWVLFFNVLVLIIHIAC-YQLMMYISK 78
           ENA  +   R + +A+ + Y ++  L +Y + + W  +  +++  +  A  Y+ +  ++K
Sbjct: 12  ENAKHMAKLRRIIIASNAVYFVVRMLIFYSSFT-WKHWIGLVITSLAYAFPYKQLDQMAK 70

Query: 79  PRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILP 132
           P   ++ +L+D G D+   GG+  ++ D++ ++   Q+ ++I   FW   L++P
Sbjct: 71  PSVTDDGELIDGGFDMTT-GGICGYLHDVIYITCFVQLASIITGKFWYTYLVIP 123


>At4g30500.1 68417.m04330 expressed protein contains Pfam PF05620:
           Protein of unknown function (DUF788)
          Length = 173

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 28/115 (24%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 20  ENAATVKFYRNMSMAATSFYGIITALFYYENIS--NWVLFFNVLVLIIHIACYQLMMYIS 77
           ENA  +   R + +     Y ++  +  + + +  NW+    VL  + +   Y+L+  ++
Sbjct: 12  ENARHMAKLRLIMILCNILYVLVRVIISHSSHTWKNWIGL--VLTSLGYGIPYKLLHQMA 69

Query: 78  KPRYLNNTQLLDPGLDLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILP 132
           KP   +  +LLD G D++  G  G ++ D++ ++   QV ++I+  FW   L++P
Sbjct: 70  KPSVSDAGELLDGGFDMSTPGMCG-YLHDVLYITCFVQVGSIISGKFWYAYLVIP 123


>At5g65380.1 68418.m08223 ripening-responsive protein, putative
           similar to ripening regulated protein DDTFR18
           [Lycopersicon esculentum] GI:12231296; contains Pfam
           profile PF01554: Uncharacterized membrane protein family
          Length = 486

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 93  DLNMEGGMGEHIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLLWTNI 143
           +L    G G     IV   S+TQ L +I  +FW+L+++L  ++ W+  +++
Sbjct: 327 ELGAGNGKGARFATIV---SVTQSL-IIGLFFWVLIMLLHNQIAWIFSSSV 373


>At3g22710.1 68416.m02865 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 326

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 103 HIKDIVILSSITQVLALINNYFWLLLLILPIRVFWLL 139
           ++ D     +I  ++   N Y+  +L +LPI + W+L
Sbjct: 260 NVNDDATSKNIVYIIGEDNGYYTEILFLLPINIHWVL 296


>At5g63750.1 68418.m08001 IBR domain-containing protein contains a
           Prosite:PS00518 Zinc finger, C3HC4 type (RING finger),
           signature and Pfam:PF01485 IBR domain
          Length = 536

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 58  FNVLVLIIHIACYQLMMYISKPRYLNN 84
           FNV+ L  HI C++ M+   KP   NN
Sbjct: 206 FNVVCLCGHIFCWRCMLESHKPVTCNN 232


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.331    0.144    0.456 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,890
Number of Sequences: 28952
Number of extensions: 116133
Number of successful extensions: 353
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 12,070,560
effective HSP length: 76
effective length of query: 100
effective length of database: 9,870,208
effective search space: 987020800
effective search space used: 987020800
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.9 bits)
S2: 56 (26.6 bits)