Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000661-TA|BGIBMGA000661-PA|IPR013766|Thioredoxin domain,
IPR012336|Thioredoxin-like fold, IPR000886|Endoplasmic reticulum
targeting sequence, IPR006662|Thioredoxin-related,
IPR005788|Disulphide isomerase
         (632 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.62 

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.62
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 238 RQAIVEFMRDPVAQPKQKKKDVVDESWARDTDVVHLN-GDSF 278
           R   +  +R  VA+ + ++K+V+D  +  D D V+L  G SF
Sbjct: 431 RSEYLNHLRANVAEGRNQRKNVLDRLFRMDRDAVYLQPGMSF 472


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.405 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,641
Number of Sequences: 429
Number of extensions: 7324
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 1
length of query: 632
length of database: 140,377
effective HSP length: 62
effective length of query: 570
effective length of database: 113,779
effective search space: 64854030
effective search space used: 64854030
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)