Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000660-TA|BGIBMGA000660-PA|IPR009984|Geminin
         (161 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.7  
AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory recept...    23   1.7  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    21   5.1  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   6.7  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    21   6.7  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    21   6.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   8.8  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 80  KVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEV 127
           K+V EK   +L   L  N+I        T  N +  KLL   N  ++V
Sbjct: 4   KLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQV 51


>AM292324-1|CAL23136.1|  398|Tribolium castaneum gustatory receptor
           candidate 3 protein.
          Length = 398

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)

Query: 80  KVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEV 127
           K+V EK   +L   L  N+I        T  N +  KLL   N  ++V
Sbjct: 22  KLVVEKFLNSLQIYLQHNQIFGFVTFTCTRSNFRSSKLLILYNIILQV 69


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 6/29 (20%), Positives = 17/29 (58%)

Query: 39  YFSPRNIVTKKKNSSKSIQVNLDKWISEN 67
           Y +  ++  ++KN+++     L  W++E+
Sbjct: 78  YGAGYDLAARRKNATRESTATLKAWLNEH 106


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 65  SENDLCLEVPSETYWKVV 82
           + ND+CL +P     K+V
Sbjct: 116 NSNDVCLAIPESLVIKLV 133


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)

Query: 19  ILKSVD--KDL-----LAGRKKGSIKEYFSPR 43
           IL++VD  KD+     L  R KGSIK  F PR
Sbjct: 457 ILEAVDTRKDMAFVSDLVLRPKGSIKVKFVPR 488


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 20.6 bits (41), Expect = 6.7
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 7/32 (21%)

Query: 19  ILKSVD--KDL-----LAGRKKGSIKEYFSPR 43
           IL++VD  KD+     L  R KGSIK  F PR
Sbjct: 457 ILEAVDTRKDMAFVSDLVLRPKGSIKVKFVPR 488


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 8.8
 Identities = 8/22 (36%), Positives = 14/22 (63%)

Query: 64  ISENDLCLEVPSETYWKVVAEK 85
           ++EN++    PSET   + AE+
Sbjct: 972 VAENEIGSSEPSETVTIITAEE 993


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.307    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,381
Number of Sequences: 317
Number of extensions: 1368
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 161
length of database: 114,650
effective HSP length: 52
effective length of query: 109
effective length of database: 98,166
effective search space: 10700094
effective search space used: 10700094
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.7 bits)
S2: 40 (20.2 bits)