Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000660-TA|BGIBMGA000660-PA|IPR009984|Geminin
(161 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0481 + 23284296-23284448,23284553-23284753,23284855-232879... 38 0.005
04_04_1037 + 30316557-30316692,30317104-30317180,30317287-303173... 32 0.19
02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217 31 0.33
05_01_0146 - 953957-956278,956468-956786,957185-957213 30 0.77
05_03_0052 + 7827973-7828031,7829012-7829139,7829243-7829305,783... 30 1.0
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 1.8
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 29 2.4
04_04_0664 - 27066253-27067155,27067242-27067508,27067707-270683... 29 2.4
02_05_0405 + 28708077-28708391,28708478-28708573,28709030-287094... 28 3.1
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 27 5.4
02_05_0469 + 29297209-29297527,29297847-29297961,29298060-292982... 27 5.4
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559... 27 5.4
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 27 5.4
03_06_0014 - 31012116-31012229,31012773-31012985,31013058-310131... 27 9.5
>02_04_0481 +
23284296-23284448,23284553-23284753,23284855-23287971,
23288510-23289353,23289468-23290120,23290573-23290676,
23290898-23291000
Length = 1724
Score = 37.5 bits (83), Expect = 0.005
Identities = 28/107 (26%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 33 KGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAE 92
KG ++E + ++ +KK+ + ++ LD+ +E + + V EK ++A E
Sbjct: 740 KGLVQEREGLKQVLDEKKSDIEKLKHALDEKNAELENLKQTLDGN--NSVLEKLKQAWDE 797
Query: 93 ALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDT 139
+E+E + ++L + E K K LDE NS IE K +++ +T
Sbjct: 798 LNSESENIKQALDVKNSEVDKLKHALDENNSEIENLKHTLNEKNSET 844
>04_04_1037 +
30316557-30316692,30317104-30317180,30317287-30317353,
30317761-30317813,30317906-30318322
Length = 249
Score = 32.3 bits (70), Expect = 0.19
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 78 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTAD 137
Y K + EK +K ++ N + L + S +T+ NL +D A E ELM +D
Sbjct: 126 YLKEILEKAQKNISLDANGSANLSSTRSQITDINLALSGFMDNATQVQEENNELMKPISD 185
Query: 138 D 138
D
Sbjct: 186 D 186
>02_02_0321 - 8934512-8935504,8935581-8935715,8935831-8936217
Length = 504
Score = 31.5 bits (68), Expect = 0.33
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 76 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDE 120
E Y +VV +++R+A A L E E + ++ L E+ LK+++ D+
Sbjct: 215 EAYLQVVGQEKREAEAMKLLEEEQMQRTAKELLEQYLKFRQEADD 259
>05_01_0146 - 953957-956278,956468-956786,957185-957213
Length = 889
Score = 30.3 bits (65), Expect = 0.77
Identities = 20/64 (31%), Positives = 28/64 (43%)
Query: 84 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEI 143
E +A +EALN + + + LTEEN+K L+E E K + D E
Sbjct: 453 EAAEEAASEALNNEKAANVKIEGLTEENVKLISELNETRDREEKEKRAVEDLTAALSEES 512
Query: 144 DDTK 147
D K
Sbjct: 513 DKAK 516
>05_03_0052 +
7827973-7828031,7829012-7829139,7829243-7829305,
7830323-7830444,7830557-7830672,7830760-7831567,
7831800-7832528,7832638-7832859,7833089-7833184,
7833273-7833467,7834303-7834416,7835368-7835651,
7836216-7836293,7836326-7836449,7836739-7836786
Length = 1061
Score = 29.9 bits (64), Expect = 1.0
Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 55 SIQVNLDKWISENDLCLEVPSETYWKVV--AEKRRKALAEALNENEILHKSLSLLTEENL 112
S+Q + D S ++ C ++ W +V ++ R A++E NE++H ++ ++++
Sbjct: 634 SLQKSCDN--SADEYCFS--TKELWSIVFPSDTERIAISETRKMNEVVHAQAKIIADQDV 689
Query: 113 KYKKL 117
YK L
Sbjct: 690 MYKYL 694
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.1 bits (62), Expect = 1.8
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 10/101 (9%)
Query: 8 ESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISEN 67
E+ SNT ILK RKKGS KE SP N + + + +
Sbjct: 636 EADSGSNTKFLILKKF------ARKKGS-KESDSPHNSLDATSTVQPIRRKKAAGRLKGS 688
Query: 68 DLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLT 108
+ ++ ET+ + ++ KAL + LN NE+ ++ L LT
Sbjct: 689 SVERQLEGETH---IQQQLNKALEDNLNANEVTNQELLPLT 726
>09_04_0151 - 15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 28.7 bits (61), Expect = 2.4
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 19/103 (18%)
Query: 33 KGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAE 92
KG ++E F + KK+ N+D ++EN+L ++ S + E+R K L+E
Sbjct: 1208 KGFLRETFEESERLLKKER-------NIDTGVNENELHQQLLS------ITEERDKLLSE 1254
Query: 93 ALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDT 135
N ++++S E ++ K +DE +S I + + M ++
Sbjct: 1255 IKYMNSVINES------ELIQAKATIDELSSRISIVEAKMKNS 1291
>04_04_0664 -
27066253-27067155,27067242-27067508,27067707-27068368,
27068479-27069047,27070011-27070108
Length = 832
Score = 28.7 bits (61), Expect = 2.4
Identities = 34/127 (26%), Positives = 60/127 (47%), Gaps = 14/127 (11%)
Query: 21 KSVDKDL---LAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSET 77
K V DL L+ KKG I E R+ + + K I++ L++ ++++ EV E
Sbjct: 583 KQVAADLVRKLSSDKKGLIDE---KRSFIEENKKLHAHIKI-LEQSVADHQ---EVSRER 635
Query: 78 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANS-FIEVCKELMSDTA 136
+ A+K ++ LA + EN+ L + E+N K L++ S +E CK ++ D
Sbjct: 636 --AISADKLKEQLAASEKENKQLELARLNQEEKNSSLLKELEDCRSKLLESCK-MVQDAV 692
Query: 137 DDTGIEI 143
G +
Sbjct: 693 QKLGANV 699
>02_05_0405 +
28708077-28708391,28708478-28708573,28709030-28709450,
28710051-28710141,28710483-28710819,28710905-28711053,
28711782-28712295
Length = 640
Score = 28.3 bits (60), Expect = 3.1
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 84 EKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKE 130
E+ R+A+ E + E + E+ ++ +K+L EAN+ I++ K+
Sbjct: 199 EQMRRAIEEQIQEERRKTDRAKAIVEKEIEQEKILAEANARIKLKKQ 245
>09_06_0320 -
22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 27.5 bits (58), Expect = 5.4
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 73 VPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELM 132
VP + Y ++A++ + A++ E + L L+T NLK +K + IE + L
Sbjct: 413 VPVKAYIHIMAQQSQAAVSSDAILPEAPREVLPLITSSNLKAEK--KKEFKLIEGNQYLR 470
Query: 133 SDTADDTGIEIDD 145
S T D + +DD
Sbjct: 471 S-TVSDLSLAVDD 482
>02_05_0469 +
29297209-29297527,29297847-29297961,29298060-29298255,
29298427-29298540,29298695-29298868,29299326-29299520,
29299666-29299788,29299892-29300004,29300117-29300237,
29300363-29300623,29301712-29301921
Length = 646
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 51 NSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILH-----KSLS 105
N ++ +L +S +D + P E +V A+KR K L L+ + H LS
Sbjct: 409 NDVMALPEDLKTKLSIDDELVSSPKEALSRVSADKRNKHLKSGLSHSYSTHGDKNIVKLS 468
Query: 106 LLTEENLKY 114
LTE N ++
Sbjct: 469 KLTETNRRF 477
>01_06_0293 -
28254673-28254878,28255189-28255306,28255767-28255961,
28256701-28256800,28256887-28256972,28257078-28257239,
28257965-28258101,28258233-28258281,28258688-28258746,
28258862-28258896,28259384-28259433,28260173-28260332,
28260898-28260963,28261065-28261162,28261649-28261696,
28262114-28262242,28262667-28262769,28262858-28262954,
28263181-28263241,28263659-28263740,28263845-28263962,
28264039-28266325
Length = 1481
Score = 27.5 bits (58), Expect = 5.4
Identities = 27/127 (21%), Positives = 60/127 (47%), Gaps = 16/127 (12%)
Query: 29 AGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRK 88
+GRK+ +I YF+ + K ++S + V+ ++ ND + + +VV E ++
Sbjct: 601 SGRKQSTITNYFARTMLAASKSDTSDKVTVDANQNNVRND-------DQFTEVV-ESEKQ 652
Query: 89 ALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEIDDTKI 148
++++ L +I+ +S E + LL++A + V ++ D++ + +D I
Sbjct: 653 SVSQLL---QIVDGGMS--RESAI---SLLEKAKGDVNVAVDIFYSKTDNSNVLENDMNI 704
Query: 149 CNGTIEN 155
EN
Sbjct: 705 VTQNTEN 711
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 27.5 bits (58), Expect = 5.4
Identities = 20/104 (19%), Positives = 52/104 (50%), Gaps = 10/104 (9%)
Query: 48 KKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEK----RRKAL------AEALNEN 97
++K + +S+ +++ ++EN+ + + E Y K + ++ +++A+ A L++
Sbjct: 213 QEKKALESVVSSMESKLAENEAAISLMRENYEKRLLDQQTAQKKQAMKFQEQEASLLDQL 272
Query: 98 EILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGI 141
K+++ L+EE + K L +E I + ++ DD +
Sbjct: 273 SSTKKTVTSLSEEFRREKTLAEELREEIRRLESSLAQAGDDKDV 316
>03_06_0014 -
31012116-31012229,31012773-31012985,31013058-31013171,
31013909-31014040,31014624-31014692,31014763-31015017,
31015347-31015520,31016104-31016280,31016999-31017107,
31017343-31017506,31018221-31018517
Length = 605
Score = 26.6 bits (56), Expect = 9.5
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 38 EYFSPRNIVTKKKNSSKSIQVNLDKWISEND 68
++FS +T+K ++ + + WI END
Sbjct: 375 DFFSGAYAITRKASTEDEKTIKMQTWIDEND 405
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.126 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,371,947
Number of Sequences: 37544
Number of extensions: 162528
Number of successful extensions: 444
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 17
length of query: 161
length of database: 14,793,348
effective HSP length: 77
effective length of query: 84
effective length of database: 11,902,460
effective search space: 999806640
effective search space used: 999806640
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 56 (26.6 bits)
- SilkBase 1999-2023 -