GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000660-TA|BGIBMGA000660-PA|IPR009984|Geminin
         (161 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    26   0.21 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   2.6  

>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 25.8 bits (54), Expect = 0.21
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 45  IVTKKKNSSKSIQ-VNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKS 103
           IV K  ++ + I  + + K IS N    E  +  Y  +V+ K +K     LN NE+  + 
Sbjct: 340 IVAKNNDTLQFISGIKIIKQISSN--IYERQNNEYIWIVSNKYQKIANGDLNFNEVNFRI 397

Query: 104 LSLLTEENLKYKKLLDEANSFIEV 127
           L+    + ++Y +  +   +F  +
Sbjct: 398 LNAPVNQLIRYTRCENPKTNFFSI 421


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 7   EESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSK 54
           +E+ +  N    ILKS+   L      G +     P+NI+  K    K
Sbjct: 148 DEAILIKNERICILKSITCALQFCHNAGIVHADVKPKNILMSKNGQPK 195


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.307    0.126    0.342 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,827
Number of Sequences: 429
Number of extensions: 1796
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 161
length of database: 140,377
effective HSP length: 53
effective length of query: 108
effective length of database: 117,640
effective search space: 12705120
effective search space used: 12705120
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.2 bits)
S2: 41 (20.6 bits)