Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000660-TA|BGIBMGA000660-PA|IPR009984|Geminin
(161 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05850.1 68418.m00643 leucine-rich repeat family protein cont... 31 0.28
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 31 0.49
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 30 0.65
At3g22220.1 68416.m02803 hAT dimerisation domain-containing prot... 30 0.65
At3g01770.1 68416.m00116 DNA-binding bromodomain-containing prot... 30 0.65
At5g27220.1 68418.m03247 protein transport protein-related low s... 30 0.86
At4g31230.1 68417.m04433 protein kinase family protein contains ... 30 0.86
At5g53440.1 68418.m06641 expressed protein 29 1.1
At4g25260.1 68417.m03634 invertase/pectin methylesterase inhibit... 29 1.5
At1g23935.1 68414.m03020 apoptosis inhibitory protein 5 (API5)-r... 29 1.5
At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase... 29 2.0
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 29 2.0
At4g04890.1 68417.m00712 homeobox-leucine zipper protein protode... 29 2.0
At4g03153.1 68417.m00429 kinase interacting family protein simil... 29 2.0
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 28 2.6
At5g60930.1 68418.m07643 chromosome-associated kinesin, putative... 28 2.6
At4g02300.1 68417.m00311 pectinesterase family protein contains ... 28 2.6
At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576... 28 2.6
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 28 2.6
At4g37320.1 68417.m05285 cytochrome P450 family protein 28 3.5
At1g63440.1 68414.m07174 copper-exporting ATPase, putative / res... 28 3.5
At5g65460.1 68418.m08232 kinesin motor protein-related contains ... 27 4.6
At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger) fa... 27 4.6
At5g16730.1 68418.m01959 expressed protein weak similarity to mi... 27 4.6
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar... 27 4.6
At4g22320.1 68417.m03227 expressed protein 27 4.6
At2g18910.1 68415.m02206 hydroxyproline-rich glycoprotein family... 27 4.6
At1g48740.1 68414.m05454 expressed protein 27 4.6
At1g05070.1 68414.m00509 expressed protein 27 4.6
At2g24370.1 68415.m02912 protein kinase family protein contains ... 27 6.0
At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR ... 27 6.0
At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR ... 27 6.0
At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR ... 27 6.0
At1g05320.1 68414.m00539 myosin-related similar to non-muscle my... 27 6.0
At5g55540.1 68418.m06919 expressed protein 27 8.0
At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger) fa... 27 8.0
At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical ... 27 8.0
At5g21900.1 68418.m02539 expressed protein 27 8.0
At3g26930.1 68416.m03369 hypothetical protein 27 8.0
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr... 27 8.0
At2g26200.1 68415.m03146 expressed protein 27 8.0
At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-... 27 8.0
>At5g05850.1 68418.m00643 leucine-rich repeat family protein
contains Pfam PF00560: Leucine Rich Repeat domains;
similar to (SP:Q9UQ13) Leucine-rich repeat protein
SHOC-2 (Ras-binding protein Sur-8) (SP:Q9UQ13) {Homo
sapiens}
Length = 506
Score = 31.5 bits (68), Expect = 0.28
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 82 VAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEA 121
VAEK +K EA+ + +I +KS+ L E + Y+KLL EA
Sbjct: 124 VAEKEQKR-REAVEQEKIWYKSILKLNELHESYEKLLKEA 162
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 30.7 bits (66), Expect = 0.49
Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 14/137 (10%)
Query: 12 NSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCL 71
N+N + I++S DK +G+++E + ++ + K + +S V E L
Sbjct: 237 NANLRSQIVQSPDK------LQGALEE---KKLVLGETKKAEQSAMVTFQ----EKAAIL 283
Query: 72 EVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKEL 131
EV + EK KAL + L+E+ + +KSL E + K L++ N ++ ++
Sbjct: 284 EVFEKVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIGK-LEQLNESLKQLEKE 342
Query: 132 MSDTADDTGIEIDDTKI 148
+ DD ++++ K+
Sbjct: 343 KAVMFDDWTKQLNELKV 359
>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 501
Score = 30.3 bits (65), Expect = 0.65
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 5/94 (5%)
Query: 65 SENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSF 124
++N + P E + ++++ A NE E L + T+++ K KKL D +
Sbjct: 41 ADNPFRRKQPQEIKESSIPDEKKGDKRNAENEEEEEETDLPVKTKKSKKEKKLTDSGDE- 99
Query: 125 IEVCKELMSDTADDTGIEIDDTKICNGTIENGIE 158
KE +S+ +++G+ K IEN E
Sbjct: 100 ----KETISEAVEESGLVSKRKKRKRDEIENEYE 129
>At3g22220.1 68416.m02803 hAT dimerisation domain-containing protein
contains Pfam profiles PF04937: Protein of unknown
function (DUF 659), PF05699 hAT family dimerisation
domain
Length = 761
Score = 30.3 bits (65), Expect = 0.65
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 60 LDKWISENDLCLEVPSETYWKVVA-EKRRKALAEALNENEIL 100
L+ W+S N +C+E + WK + KR + +A ++E E L
Sbjct: 692 LEDWVSRNQVCIEGNGSSDWKSLEFIKRSEEVAVVIDETEDL 733
>At3g01770.1 68416.m00116 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 620
Score = 30.3 bits (65), Expect = 0.65
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 76 ETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 134
E WK + +K +E N + HK +++ K K + NS +E K +M+D
Sbjct: 224 EVRWKTIEKKSSGTKSEPSNLATLAHKDIAIPEPVAKKRKMNAVKRNSLLEPAKRVMTD 282
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 29.9 bits (64), Expect = 0.86
Identities = 29/130 (22%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 38 EYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLE--VPSETYWKVVAE---KRRKALAE 92
E + V K + + ++L++ E ++ +E S+T + +AE ++RK L
Sbjct: 292 ELIKTQGEVELKGKQLEQMDIDLERHRGEVNVVMEHLEKSQTRSRELAEEIERKRKELTA 351
Query: 93 ALNENEILHKSLSLLTEENLKYKKLLD-EANSFIEVCKELMSDTADDTGIEIDDTKICNG 151
L++ K++ L+ EE +KLLD ++ + KEL D ++++ N
Sbjct: 352 VLDKTAEYGKTIELVEEELALQQKLLDIRSSELVSKKKEL-----DGLSLDLELVNSLNN 406
Query: 152 TIENGIEPIE 161
++ ++ IE
Sbjct: 407 ELKETVQRIE 416
>At4g31230.1 68417.m04433 protein kinase family protein contains
Pfam profiles PF00069: Protein kinase domain, PF00582:
universal stress protein family
Length = 764
Score = 29.9 bits (64), Expect = 0.86
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 11 INSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKN 51
INSN++ T + D L+ G +GS K+ F P + +K+
Sbjct: 64 INSNSSKTSQINGDSSLVCGEPEGSYKQLFLPFRCLCSRKD 104
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 29.5 bits (63), Expect = 1.1
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 3 EHSGEESKINSNTATTILKSVDKDLLAGRKK--GSIK-EYFSPRNIVTKKKNSSKSIQVN 59
E S +E K ++TT+ S + RK+ S+ EY+ + K+ KS +
Sbjct: 25 ETSLKEKKSKEESSTTVRVSKESGSGDKRKEYYDSVNGEYYEEYTSSSSKRRKGKSGESG 84
Query: 60 LDKWISENDLCLEVPSETYWKVVAEKRRK 88
D+W ++D E +T KV +EK RK
Sbjct: 85 SDRWNGKDDDKGESSKKT--KVSSEKSRK 111
>At4g25260.1 68417.m03634 invertase/pectin methylesterase inhibitor
family protein low similarity to pectinesterase from
Phaseolus vulgaris SP|Q43111, Lycopersicon esculentum
SP|Q43143, Arabidopsis thaliana SP|Q42534; contains Pfam
profile PF04043: Plant invertase/pectin methylesterase
inhibitor
Length = 201
Score = 29.1 bits (62), Expect = 1.5
Identities = 24/105 (22%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Query: 43 RNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHK 102
RN+ + ++ I+ + + S D C + S +Y + ++ RK AL + K
Sbjct: 25 RNLEEESSGDTEFIKASCET-TSYPDRCFQSLS-SYASEIKKQPRKLAETALAVSIARAK 82
Query: 103 SLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEIDDTK 147
S E YK + + + C E M DT D + + K
Sbjct: 83 SAKTYVSEMTDYKGITKRQHEAVADCLEEMGDTVDRLSNSLKELK 127
>At1g23935.1 68414.m03020 apoptosis inhibitory protein 5
(API5)-related contains weak hit to Pfam profile
PF05918: Apoptosis inhibitory protein 5 (API5)
Length = 660
Score = 29.1 bits (62), Expect = 1.5
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 82 VAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGI 141
+ R K L L +++ KSL LLT + L D + + + + D +
Sbjct: 219 ITRARLKKLDTTLAKDDKKVKSLCLLTGLIYFFYLLRDSTCPIAPIRSDALESVSKDCKL 278
Query: 142 EIDDTKICNGT 152
+DDT IC+ T
Sbjct: 279 NLDDTGICDLT 289
>At5g58690.1 68418.m07353 phosphoinositide-specific phospholipase C
family protein contains Pfam profile: PF00388
phosphatidylinositol-specific phospholipase C
Length = 578
Score = 28.7 bits (61), Expect = 2.0
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 5/104 (4%)
Query: 16 ATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDK-WISENDLCLEVP 74
A ++K + D++ + G +KE+ SP ++ K S+K + +L K SE+D +
Sbjct: 218 AAEMMKEIFMDMVYFPEAGGLKEFPSPEDLKYKIVISTKPPKGSLRKDKDSESDASGKAS 277
Query: 75 SETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLL 118
S+ EK + +EA NE + + S L + L Y +L+
Sbjct: 278 SDV--SADDEKTEEETSEAKNEEDGFDQESSNL--DFLTYSRLI 317
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 28.7 bits (61), Expect = 2.0
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 2 SEHSGEESKINSNTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSI 56
S H+ ES N T+ + LAG GS + P N+ + + SS++I
Sbjct: 2052 SSHNAVESSSQGNPQTSATPPLPPPSLAGETSGSSQPKLPPHNLNSTEPLSSEAI 2106
>At4g04890.1 68417.m00712 homeobox-leucine zipper protein
protodermal factor 2 (PDF2) identical to GP|14276060|
protodermal factor2 (GI:14276060)
Length = 743
Score = 28.7 bits (61), Expect = 2.0
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 68 DLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEA 121
DL LE +W + KA +E +EN+IL L EN +YK+ L A
Sbjct: 98 DLNLEPLQVKFWFQNKRTQMKAQSER-HENQILKSDNDKLRAENNRYKEALSNA 150
>At4g03153.1 68417.m00429 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 215
Score = 28.7 bits (61), Expect = 2.0
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 39 YFSPRNIVTKKKNSSKSIQVNLDKWISEN--DLCLEVPSETYWK-VVAEKRRKALAEALN 95
Y S R++ K K+ +N D S + ++ EV ET V AE + + E +
Sbjct: 73 YRSHRSLAQKHDLLIKTSSLNSDSHNSSSCDEIRSEVCEETESSDVEAETEKDQIVEFDD 132
Query: 96 ENEILHKSLSLLTEENLKYKK 116
+E + + L +L EEN YK+
Sbjct: 133 GDETMKEELEILREENRVYKE 153
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 28.3 bits (60), Expect = 2.6
Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 71 LEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFI-EVCK 129
L+ S+T KV+ ++RK E EIL K ++LL + L+ N FI + K
Sbjct: 250 LKYHSQTVGKVIGGEKRK------TEAEILAKGVNLLVATPGRLLDHLENTNGFIFKNLK 303
Query: 130 ELMSDTAD---DTGIEIDDTKICN 150
L+ D AD + E D KI N
Sbjct: 304 FLVMDEADRILEQNFEEDLKKILN 327
>At5g60930.1 68418.m07643 chromosome-associated kinesin, putative
microtubule-associated motor KIF4 , Mus musculus,
PIR:A54803
Length = 1294
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 79 WKVVAEKRRKALAEALNENEI-LHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSD 134
WK EK L + NE +HK ++L ++ L ++ +EA+ + KEL+ +
Sbjct: 696 WKASREKEVMQLKKEGRRNEYEMHKLMALNQKQKLVLQRKTEEASQVTKRLKELLDN 752
>At4g02300.1 68417.m00311 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 532
Score = 28.3 bits (60), Expect = 2.6
Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 45 IVTKKKNSSKSIQVNLD--KWISEND-LCLEVP 74
++++KK S KS +V+++ W+SEND LE P
Sbjct: 182 VISRKKPSPKSSEVDVEYPSWLSENDQRLLEAP 214
>At2g24140.1 68415.m02884 expressed protein contains Pfam PF04576:
Protein of unknown function, DUF593
Length = 273
Score = 28.3 bits (60), Expect = 2.6
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 105 SLLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEI 143
+LL E +YK++++E S +E+ EL+ D +EI
Sbjct: 12 ALLAMEASQYKRMVEERMSHVELSMELLEDLNYQKEVEI 50
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 28.3 bits (60), Expect = 2.6
Identities = 19/71 (26%), Positives = 34/71 (47%)
Query: 50 KNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTE 109
K+ SK ++V LDK I+EN+ L+ + ++ + + + N E L K
Sbjct: 415 KSLSKKLEVQLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKNFAEALEKEKLKCQM 474
Query: 110 ENLKYKKLLDE 120
E ++ K L+E
Sbjct: 475 EYMESVKKLEE 485
>At4g37320.1 68417.m05285 cytochrome P450 family protein
Length = 495
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 14 NTATTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDK 62
N +++ + +++AG G++ +Y N VT +N +K + LD+
Sbjct: 203 NDEAKLVRELIAEIMAGAGSGNLADYLPSINWVTNFENQTKILGNRLDR 251
>At1g63440.1 68414.m07174 copper-exporting ATPase, putative /
responsive-to-antagonist 1, putative /
copper-transporting ATPase, putative similar to ATP
dependent copper transporter SP|Q9S7J8 [Arabidopsis
thaliana]
Length = 995
Score = 27.9 bits (59), Expect = 3.5
Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 17 TTILKSVDKDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSE 76
T IL S++ +L+ + + I K + KSI V D W + N + EV +
Sbjct: 777 TGILVSINSELIGVLSVSDPLKPSAREAISILKSMNIKSIMVTGDNWGTANSIAREVGID 836
Query: 77 TYWKVVAEKRRKALAEALNE 96
+ V+AE + + AE + E
Sbjct: 837 S---VIAEAKPEQKAEKVKE 853
>At5g65460.1 68418.m08232 kinesin motor protein-related contains
similarity to kinesin heavy chain
Length = 1281
Score = 27.5 bits (58), Expect = 4.6
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 79 WKVVAEKRRKALAEALNENEILHKSLS----LLTEENLKYKKLLDEANSFIEVCKELMSD 134
W+ VA RK + E EN+ L + ++ L E N + L +E V L SD
Sbjct: 482 WRDVANDARKEVLEKERENQRLKQEVTGLKQALKEANDQCVLLYNEVQRAWRVSFTLQSD 541
Query: 135 TADDTGIEIDDTKI 148
+ + +D KI
Sbjct: 542 LKSENAMVVDKHKI 555
>At5g37270.1 68418.m04477 zinc finger (C3HC4-type RING finger)
family protein ow similarity to RING-H2 finger protein
RHA3b [gi:3790575], RHA1a [gi:3790554]; contains Pfam
domain zinc finger, C3HC4 type (RING finger) PF00097
Length = 208
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 106 LLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEIDD 145
LL E+ +++ L DE + +C E S++ DD I + D
Sbjct: 134 LLEEQTMEFTDLGDEEETTCSICLEDFSESHDDNIILLPD 173
>At5g16730.1 68418.m01959 expressed protein weak similarity to
microtubule binding protein D-CLIP-190 [Drosophila
melanogaster] GI:2773363, SMC2-like condensin
[Arabidopsis thaliana] GI:14279543
Length = 853
Score = 27.5 bits (58), Expect = 4.6
Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 84 EKRRKALAEALNENEILHKSLSLLTEE-NLKYKKLLDEANSFIEVCKELMSDTADDTGIE 142
E + K L++ +E E L L+ + N KY+ +LDEA I+V + T
Sbjct: 482 ELKEKLLSQGDHEYETQIDDLKLVIKATNEKYENMLDEARHEIDVLVSAVEQTKKHFESS 541
Query: 143 IDDTKICNGTIENGIEPIE 161
D ++ + N ++ +E
Sbjct: 542 KKDWEMKEANLVNYVKKME 560
>At5g03990.1 68418.m00379 expressed protein predicted protein,
Arabidopsis thaliana
Length = 302
Score = 27.5 bits (58), Expect = 4.6
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Query: 40 FSPRNIVTKKKNSSK----SIQVNLDKWISENDLCLEVPSETYWKVVAEKR 86
+S + T ++SSK + ++++ W E D C + S +WKVV KR
Sbjct: 17 YSRQRGTTMTQSSSKPPLANCKISVPAW--EKDFCAVIGSVPWWKVVEAKR 65
>At4g22320.1 68417.m03227 expressed protein
Length = 238
Score = 27.5 bits (58), Expect = 4.6
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 47 TKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEI 99
T +++S K +V +++ ND+ +E + K+V + K + + LNE+ +
Sbjct: 161 TVEESSEKKAEVEVEEKPDINDVPMEDIQQVEEKIVQDDEEKVVRQDLNESTV 213
>At2g18910.1 68415.m02206 hydroxyproline-rich glycoprotein family
protein
Length = 131
Score = 27.5 bits (58), Expect = 4.6
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 25 KDLLAGRKKGSIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWK 80
K + + + GS+ +F +N VTK +N+ S+ +L +W N + + Y++
Sbjct: 57 KSVASSDQDGSVLGFF--KNAVTKVQNAHSSVDDHLVRWFGLNQSKYQWALDEYYE 110
>At1g48740.1 68414.m05454 expressed protein
Length = 393
Score = 27.5 bits (58), Expect = 4.6
Identities = 22/115 (19%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 35 SIKEYFSPRNIVTKKKNSSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEAL 94
S+++Y P + ++ +K + L K+IS ++ + YW+ + + E
Sbjct: 60 SLEKYLPPEMLTATREEKAKFMSDILRKYISRDECSKAKWCKNYWQKIKSNYQPLSRELY 119
Query: 95 N-ENEI-LHKSLSLLTEENLK--YKKLLDEANSFIEVCKELMSDTADDTGIEIDD 145
N + E+ L S EN K +++++ E + V + D +E+++
Sbjct: 120 NFDPELFLLPSFRKAISENTKESFRRIISEPFPGVLVFQMFQPDFIQKLIVEVEN 174
>At1g05070.1 68414.m00509 expressed protein
Length = 184
Score = 27.5 bits (58), Expect = 4.6
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 72 EVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKE 130
E + Y +++ E+ + AE+L +++ L + Y+K D+ NS +E C+E
Sbjct: 80 EDTEKNYAELLTEELKLREAESLEKHKRADMGLLEAKKVTSSYQKEADKCNSGMETCEE 138
>At2g24370.1 68415.m02912 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 816
Score = 27.1 bits (57), Expect = 6.0
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 83 AEKRRKALAEALNENEILHKSLSLLTEENLKYKK 116
A+KR A +AL E+E K+L+ L +++Y+K
Sbjct: 434 AKKRVNAEMKALKESEEKTKALTALANSDVRYRK 467
>At1g59218.1 68414.m06674 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 52 SSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNENEILHKSLSLLTE 109
+SKS+ V D W E+ +L + P WKV+ R +++A N + I K L TE
Sbjct: 265 TSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTE 324
Query: 110 EN 111
++
Sbjct: 325 DS 326
>At1g59124.1 68414.m06672 disease resistance protein (CC-NBS-LRR
class), putative / PRM1 homolog, putative domain
signature CC-NBS-LRR exists, suggestive of a disease
resistance protein; identical to cDNA RXF10 mRNA for
PRM1 homolog, partial cds GI:6520172; contains Pfam
profiles PF00931: NB-ARC domain and PF00560: Leucine
Rich Repeat
Length = 855
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 52 SSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNENEILHKSLSLLTE 109
+SKS+ V D W E+ +L + P WKV+ R +++A N + I K L TE
Sbjct: 265 TSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTE 324
Query: 110 EN 111
++
Sbjct: 325 DS 326
>At1g58807.1 68414.m06660 disease resistance protein (CC-NBS-LRR
class), putative / PRM1 homolog, putative similar to
disease resistance protein rpp8 [Arabidopsis thaliana]
gi|3901294|gb|AAC78631; identical to cDNA RF45 mRNA for
PRM1 homolog, partial cds GI:6520196
Length = 1017
Score = 27.1 bits (57), Expect = 6.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 52 SSKSIQVNLDKWISEN-DLCLEV-PSETYWKVVAEKRRKALAEALNENEILHKSLSLLTE 109
+SKS+ V D W E+ +L + P WKV+ R +++A N + I K L TE
Sbjct: 265 TSKSLIVLDDIWEKEDWELIKPIFPPTKGWKVLLTSRNESVAMRRNTSYINFKPECLTTE 324
Query: 110 EN 111
++
Sbjct: 325 DS 326
>At1g05320.1 68414.m00539 myosin-related similar to non-muscle
myosin II heavy chain (GI:19879404) [Loligo pealei];
ESTs gb|AA042402,gb|ATTS1380 come from this gene
Length = 828
Score = 27.1 bits (57), Expect = 6.0
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 53 SKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENL 112
S S+Q LD+ +EN+L + ++ K+ + + ++ E I K TE
Sbjct: 375 SLSLQEELDQSSAENELLADTNNQLKIKI---QELEGYLDSEKETAI-EKLNQKDTEAKD 430
Query: 113 KYKKLLDEANSFIEVCKELM--SDTADDTGIEIDDTKICNGTIENGIEPIE 161
KL N E ++++ S AD +E+++ + T+E+ IE +E
Sbjct: 431 LITKLKSHENVIEEHKRQVLEASGVADTRKVEVEEALLKLNTLESTIEELE 481
>At5g55540.1 68418.m06919 expressed protein
Length = 1380
Score = 26.6 bits (56), Expect = 8.0
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Query: 52 SSKSIQVNLDKWISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEEN 111
SS +I V D S + + +E+ T + R E E+L +SL LL +
Sbjct: 49 SSMNINVTRDNLTSLSQIFIELA--TSLETQTSLRNLEFEGIFWEIELL-QSLGLLLDNT 105
Query: 112 LKYKKLLDEANSFIEVCKELMSD 134
K K+L N F E C +S+
Sbjct: 106 SKIKQLAFRKNRFSEQCLNELSE 128
>At5g37230.1 68418.m04472 zinc finger (C3HC4-type RING finger)
family protein low similarity to RING-H2 finger protein
RHA3b, Arabidopsis thaliana, PIR:T41745 [gi:3790575];
contains Pfam domain zinc finger, C3HC4 type (RING
finger) PF00097
Length = 208
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 106 LLTEENLKYKKLLDEANSFIEVCKELMSDTADDTGIEIDD 145
LL E+ ++ L DE + +C E S++ DD I + D
Sbjct: 134 LLEEQTMELTNLGDEEETTCSICMEDFSESHDDNIILLPD 173
>At5g28646.1 68418.m03507 wave-dampened2 (WVD2) nearly identical to
WAVE-DAMPENED2 [Arabidopsis thaliana] GI:28453880
Length = 293
Score = 26.6 bits (56), Expect = 8.0
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 80 KVVAEKRRKALAEALNENEIL--HKSLSLLTEENLKYKKLLDE 120
K+ AE++ E EN + HKS +++TE + K KK LDE
Sbjct: 23 KIAAEEQDYEEKECTEENSLSQNHKSSNVITENDSK-KKNLDE 64
>At5g21900.1 68418.m02539 expressed protein
Length = 544
Score = 26.6 bits (56), Expect = 8.0
Identities = 15/59 (25%), Positives = 26/59 (44%)
Query: 70 CLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVC 128
C EV E W + ++ + + +++ KSL +TE K L +N F + C
Sbjct: 372 CNEVTDECMWHIGRYCKKLEALDITDLDKLTDKSLEFITEGCRYLKSLKLTSNRFSDEC 430
>At3g26930.1 68416.m03369 hypothetical protein
Length = 409
Score = 26.6 bits (56), Expect = 8.0
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 77 TYWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVCKELMSDTA 136
T+ V +R L +++E S+ ++ +LKY K+L + IE EL+ +
Sbjct: 159 TFTIAVPSLKRLTLTTEFDDDE---DSVYVINAPSLKYLKILGDKAYLIENSPELVEVSL 215
Query: 137 DDTGIEIDDTKICNGTIEN 155
D + +D I + +EN
Sbjct: 216 TDRQVTVDGYPIAS-YVEN 233
>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 1164
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 64 ISENDLCLEVPSETYWKVVAEKRRKALAEALNENEILHKSLSLL 107
+S N L ++P + YW R+ +LA L EI LSLL
Sbjct: 258 LSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEI-PPELSLL 300
>At2g26200.1 68415.m03146 expressed protein
Length = 565
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 51 NSSKSIQVNL-DKWISENDLCLEVPS 75
NS +S N+ D W SE DL E+PS
Sbjct: 529 NSKESPIGNIIDSWFSEKDLVAEIPS 554
>At1g79840.1 68414.m09327 homeobox-leucine zipper protein 10 (HB-10)
/ HD-ZIP transcription factor 10 / homeobox protein
(GLABRA2) identical to homeobox protein (GLABRA2)
(homeobox-leucine zipper protein ATHB-10) (HD-ZIP
protein ATHB-10) GB:P46607 [Arabidopsis thaliana]
Length = 747
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 78 YWKVVAEKRRKALAEALNENEILHKSLSLLTEENLKYKKLLDEANSFIEVC 128
+W + KA+ E +EN +L L L EEN ++ +ANS C
Sbjct: 147 FWFQNRRTQIKAIQER-HENSLLKAELEKLREENKAMRESFSKANSSCPNC 196
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.307 0.126 0.342
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,873,080
Number of Sequences: 28952
Number of extensions: 156092
Number of successful extensions: 572
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 43
length of query: 161
length of database: 12,070,560
effective HSP length: 76
effective length of query: 85
effective length of database: 9,870,208
effective search space: 838967680
effective search space used: 838967680
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
S2: 56 (26.6 bits)
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