Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000659-TA|BGIBMGA000659-PA|IPR013120|Male sterility
C-terminal, IPR004262|Male sterility
         (432 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    29   0.084
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    25   1.4  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    24   2.4  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    23   3.2  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    23   5.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 0.084
 Identities = 12/45 (26%), Positives = 23/45 (51%)

Query: 360 FYHLVPAYCIDFLLFLMGQKRFLFVVHWVCKILFWLLILSFVAAY 404
           FY++   +C  F++F M     L + ++ C ++  L I  F  A+
Sbjct: 261 FYYMHLLFCCAFIIFTMHLLFLLCIYYFYCALIILLCIYYFCRAF 305


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
          monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 38 PEIGNVYILMRPKKAKTVAQRLEDLQRLPLF--DRLKNERPNALN 80
          P IGN++ +MR  +   +A+R   L+  P++  D   N   N LN
Sbjct: 40 PIIGNLFDIMRTPEQLFLAERERGLKYYPIYKLDVCGNGGVNLLN 84


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 3/31 (9%)

Query: 190 RQLTLLTPSLLGPHP---NCYTFSKRLAENV 217
           +Q   L   LLG H    NC+TF + LA N+
Sbjct: 90  QQYCQLMSKLLGNHQLVYNCHTFGRFLAPNL 120


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
          monooxygenase protein.
          Length = 491

 Score = 23.4 bits (48), Expect = 3.2
 Identities = 10/31 (32%), Positives = 18/31 (58%)

Query: 38 PEIGNVYILMRPKKAKTVAQRLEDLQRLPLF 68
          P IGN++ +MR  +   +A R   L+  P++
Sbjct: 40 PIIGNLFDIMRTPEQMFLADRERGLKYYPIY 70


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.6 bits (46), Expect = 5.5
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 54  TVAQRLEDLQRLPLFDRLKNERPNALNKIKAIQGDVL 90
           TV   +E  +RLP FD+L  E   AL  +KA   +V+
Sbjct: 365 TVQLIVEFAKRLPGFDKLLREDQIAL--LKACSSEVM 399


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,349
Number of Sequences: 317
Number of extensions: 4582
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 432
length of database: 114,650
effective HSP length: 59
effective length of query: 373
effective length of database: 95,947
effective search space: 35788231
effective search space used: 35788231
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 44 (21.8 bits)