GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000659-TA|BGIBMGA000659-PA|IPR013120|Male sterility
C-terminal, IPR004262|Male sterility
         (432 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)              167   2e-41
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             34   0.19 
SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)           33   0.45 
SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.59 
SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.4  
SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)            31   1.4  
SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)                30   4.2  
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)              29   7.3  
SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)         29   7.3  
SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.3  
SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   9.7  
SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                  29   9.7  
SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)                 29   9.7  
SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)                    29   9.7  

>SB_54877| Best HMM Match : NAD_binding_4 (HMM E-Value=0)
          Length = 373

 Score =  167 bits (405), Expect = 2e-41
 Identities = 88/239 (36%), Positives = 140/239 (58%), Gaps = 17/239 (7%)

Query: 6   SVRDFYAGRNILVTGGTGFMGKVLVEKLLYSVPEIGNVYILMRPKKAKTVAQRLEDLQRL 65
           S++ F+A + +L+TGGTGF+GKVL+EKLL S   +  +Y+L R +   T  QR++++ + 
Sbjct: 3   SIQTFFADKVVLITGGTGFLGKVLLEKLLRSCRTVKCIYLLTRSRADHTPQQRIDNMLQT 62

Query: 66  PLFDRLKNERPNALNKIKAIQGDVLFEDFGLSNLEIENLSKEVTVVFHFAATLRLEAPLK 125
            LF  ++   P+ L+K+ AI GD+   D GLS  ++  +   V +VFH AAT+R +    
Sbjct: 63  RLFQNVRENDPDQLDKVTAITGDIAEADLGLSPEDMALIIGSVQIVFHSAATVRFDE--- 119

Query: 126 DNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPDYEVLGEKLYAPPAKPEHVMRLIE 185
                     LR   +       Q FVH+S+ +   D +V+ EK+Y P  +PE ++  +E
Sbjct: 120 ---------ELRVFFICP-----QAFVHVSSTYANCDRDVVDEKIYPPSIEPEKLISSLE 165

Query: 186 WLDDRQLTLLTPSLLGPHPNCYTFSKRLAENVVEQAYKDLPIVIARPSIVCPSYSEPMP 244
           W+ D  +  +TP ++   PN YTF+K LAE+V+ Q    LP+ I RPSI+  S+ EP+P
Sbjct: 166 WMSDDMVKAITPYVIDQRPNTYTFTKSLAEHVLLQEASGLPVSIFRPSIIGASFKEPLP 224



 Score = 44.4 bits (100), Expect = 2e-04
 Identities = 22/75 (29%), Positives = 34/75 (45%)

Query: 305 IPVYNVNIGHQKPMTWGDVLTVAKDYGRKYPLSWPLWYPNGDITTNYTLHEIRRIFYHLV 364
           IPVYN   G   P+TWG++  +       YP+      PN +  ++  ++       H +
Sbjct: 230 IPVYNCGTGVLNPITWGEISEIMHKTFSIYPMEDVFRRPNFNFESSKLMYYYWTYISHRI 289

Query: 365 PAYCIDFLLFLMGQK 379
           PA   D L   +GQK
Sbjct: 290 PALIADMLSIFIGQK 304


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 34.3 bits (75), Expect = 0.19
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 161 PDYEVLGEKLYAPPAKPEHVMRLIEWLDDRQLTLLTPSLLGPHPNCYTFSKRLAE-NVVE 219
           PD ++  E    P  + +   R        ++T   P    PHP      +RLA+ N + 
Sbjct: 83  PDEQLAQELAQEPGKRHQEPARTPVAAGPARITSPEPPATRPHPGRVEAGRRLAKWNRIN 142

Query: 220 QAYKD-LPIVIARPSIVCPSYSEPMPG 245
           +A K+ L +  A+   V P  SEP PG
Sbjct: 143 RAKKESLRVAAAQQLPVAPGPSEPQPG 169


>SB_32433| Best HMM Match : NAD_binding_4 (HMM E-Value=0.037)
          Length = 116

 Score = 33.1 bits (72), Expect = 0.45
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 17/101 (16%)

Query: 16  ILVTGGTGFMGKVLVEKLLYSVPEIGNVYILMRPKKAKTVAQRLEDLQRLPLFDRLKNER 75
           ILVTGGTG +G  L+ +L      I  +Y   R K++    +R        +F       
Sbjct: 2   ILVTGGTGLVGSHLLYELALKNLPIKAIY---RTKESLATVKR--------VFSYFTTNV 50

Query: 76  PNALNKIKAIQGDVLFEDFGLSNLEIENLSKEVTVVFHFAA 116
               NKI+ IQ D+           ++   KEVT+V+H AA
Sbjct: 51  DELFNKIQWIQADI------TDVPSLDEAFKEVTLVYHAAA 85


>SB_4086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2235

 Score = 32.7 bits (71), Expect = 0.59
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 189  DRQLTLLTPSLLGPHPNCYTFSKRLAE-NVVEQAYKD-LPIVIARPSIVCPSYSEP 242
            D ++T L P    PHP      +RLA+ N + +A K+ L +V A+   V P  SEP
Sbjct: 1849 DARITSLEPPATRPHPGRVEAGRRLAKWNRINRAKKEALRVVSAQQLPVAPGPSEP 1904


>SB_56913| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1603

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 234 IVCPSYSEPMPGWVDNLNGPVGVMIGAGK--GVIRTMLCDGTLSAQVI 279
           + CP  S+P+PG  DN N  + ++ G G+  G++  +      S Q+I
Sbjct: 923 VSCPDVSDPLPGMQDNYNN-LWLLCGGGESTGLVSVVRVSSASSPQII 969


>SB_45055| Best HMM Match : Ribosomal_60s (HMM E-Value=0.46)
          Length = 741

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 186 WLDDRQLTLLTPSLLGPHPNCYTFSKRLAE-NVVEQAYKD-LPIVIARPSIVCPSYSEPM 243
           WL  R +T   P    PH       +RLA+ N + +A K+ L +V A+   V P  SEP 
Sbjct: 344 WLPSR-ITSPEPPATRPHTGRVEAGRRLAKWNRMNRAKKEALRVVDAQQLPVAPGPSEPQ 402

Query: 244 PG 245
           PG
Sbjct: 403 PG 404


>SB_7587| Best HMM Match : zf-C2H2 (HMM E-Value=3.5e-13)
          Length = 351

 Score = 29.9 bits (64), Expect = 4.2
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 71  LKNERPNALNKIKAIQGDVLFEDFGLSN---LEIENLSKEVTVVFHFA-ATLRLEAPLKD 126
           + N +P AL   K    D +     L+N   LEI+   KE ++VF+   ATL+ E  L  
Sbjct: 109 IMNSKPEALRSAKDYNEDAVLCKSDLNNNNILEIKQEVKEESIVFYACKATLKHETGLSQ 168

Query: 127 NVNMNT 132
            + + T
Sbjct: 169 LIELKT 174


>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1134

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 197 PSLLGPHPNCYTFSKRLAE-NVVEQAYKD-LPIVIARPSIVCPSYSEPMPG 245
           P    PHP      +RLA+ N + +A  + L +  A+   V P  SEP PG
Sbjct: 549 PPATRPHPGRVEAGRRLAKWNRINRAKNESLRVAAAQQLPVAPGPSEPQPG 599


>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
          Length = 2858

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 62  LQRLPLFDRLKNERPNALNKIKAIQGDVLFEDFGLSNL--EIENLSKEVTVVFHFAATLR 119
           L + P   RL++E  +ALN+  A++ D    +  + NL  EI  L  +++     AA  +
Sbjct: 648 LSQTPKIKRLESELQDALNRASALEEDAKNHNQVVDNLQDEITRLKNKLSEAERQAAATQ 707

Query: 120 LEAPLKD 126
            E+  KD
Sbjct: 708 RESVEKD 714


>SB_18568| Best HMM Match : Neur_chan_LBD (HMM E-Value=3.5e-22)
          Length = 636

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 342 YPNGDITTNYTLHEI-RRIFYHLVPAYCIDFLLFLM 376
           Y  G+ TT   + ++ RR+ Y+++ AYC D L+ ++
Sbjct: 405 YEEGNYTTVKVIFKMNRRVGYYIIQAYCPDVLIVVL 440


>SB_10783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 29.1 bits (62), Expect = 7.3
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 332 RKYPLSWPLWYPNG--DITTNYTLHEIRRIFYHLVPAYCIDFLLFLMGQKRFLFVVHWVC 389
           RK P  W   Y     D+ T    H   RI   +VPAY  +FL+  +     L+   WVC
Sbjct: 81  RKAPPFWTFEYYQAFFDVDTYQVGH---RILGSMVPAYKRNFLISHIRPNPDLYGPFWVC 137

Query: 390 -KILFWLLILSFVAAY 404
             ++F   I   +A+Y
Sbjct: 138 ATLVFTTAIAGNLASY 153


>SB_24593| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1453

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 98   NLEIENLSKEVTVVFHFAATLRLEAPLKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTA 157
            N+E+++L     V+ H A T   ++ +     +NT+   R  ++A++ KN+ +  H +  
Sbjct: 1055 NIEVKDLVSAERVILHAAQTNTFKSEIDTLSKLNTAREKRDREIARE-KNVALKTHSALY 1113

Query: 158  FCYPDYEVLG 167
               P  +V G
Sbjct: 1114 MLDPFVDVEG 1123


>SB_3435| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 314

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 111 VFHFAATLRLEAPLKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCY 160
           +F F  TLR+    +  +      +L ++K  KK     +++HL    CY
Sbjct: 194 IFCFGQTLRIVRKHRTQIQAQNQQSLESMKKFKKSVLTMLYIHLLFLVCY 243


>SB_59683| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-21)
          Length = 325

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 111 VFHFAATLRLEAPLKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCY 160
           +F F  TLR+    +  +      +L ++K  KK     +++HL    CY
Sbjct: 205 IFCFGQTLRIVRKHRTQIQAQNQQSLESMKKFKKSVLTMLYIHLLFLVCY 254


>SB_15448| Best HMM Match : Utp11 (HMM E-Value=0.89)
          Length = 1328

 Score = 28.7 bits (61), Expect = 9.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 136 LRTIKVAKKLKNLQIFVHLSTAFCYPDYEVLGEKLYAPPAKPEHVMRLIEWLD 188
           LRT  + +  K+ Q+   L+   C  +YE + EK    PA  EH+M L  +++
Sbjct: 515 LRTKLLQRMSKDHQV---LNKMLC-EEYEKIAEKALTSPANTEHLMELKNYIE 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,078,217
Number of Sequences: 59808
Number of extensions: 594233
Number of successful extensions: 1056
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1049
Number of HSP's gapped (non-prelim): 17
length of query: 432
length of database: 16,821,457
effective HSP length: 84
effective length of query: 348
effective length of database: 11,797,585
effective search space: 4105559580
effective search space used: 4105559580
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)