Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000659-TA|BGIBMGA000659-PA|IPR013120|Male sterility
C-terminal, IPR004262|Male sterility
(432 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical ... 292 3e-79
U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva ... 32 0.91
AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuroni... 32 0.91
AL132949-28|CAB61106.1| 209|Caenorhabditis elegans Hypothetical... 32 0.91
U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical pr... 31 1.6
U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical p... 31 1.6
AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like tra... 30 2.8
AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-lik... 30 2.8
AL032633-1|CAA21594.1| 430|Caenorhabditis elegans Hypothetical ... 29 4.8
AF099916-4|AAC68778.1| 189|Caenorhabditis elegans Hypothetical ... 29 6.4
>AF098505-1|AAC67415.1| 536|Caenorhabditis elegans Hypothetical
protein Y71H10A.2 protein.
Length = 536
Score = 292 bits (717), Expect = 3e-79
Identities = 140/377 (37%), Positives = 219/377 (58%), Gaps = 2/377 (0%)
Query: 4 ATSVRDFYAGRNILVTGGTGFMGKVLVEKLLYSVPEIGNVYILMRPKKAKTVAQRLEDLQ 63
A SVRD YAG ++L+TGGTGF+GKV+VEKLL+++ +I N+Y+++R +K K +RL L
Sbjct: 2 AFSVRDVYAGSSVLLTGGTGFLGKVIVEKLLWTIDDIQNIYLMIRTRKGKNPQERLSGLL 61
Query: 64 RLPLFDRLKNERPNALNKIKAIQGDVLFEDFGLSNLEIENLSKEVTVVFHFAATLRLEAP 123
PLF+R++ E+P A +K+KAI GD++ E+ G+ ++ + V VV H AAT++ +
Sbjct: 62 HDPLFNRIRQEKPEAFDKLKAIGGDMMVENLGMDPEDVMLIRDNVNVVIHSAATVKFDEH 121
Query: 124 LKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPDYEVLGEKLYAPPAKPEHVMRL 183
L+ V MN GT R I + ++K+L++ VH+STA+ D EK+Y P P+ ++
Sbjct: 122 LRAAVTMNVIGTKRIIDLCHQIKDLKVLVHVSTAYANCDRFETTEKIYKSPMAPQKLVDA 181
Query: 184 IEWLDDRQLTLLTPSLLGPHPNCYTFSKRLAENVVEQAYKDLPIVIARPSIVCPSYSEPM 243
+ W+DD LT +TP +LG PN YT +K LAE+ +E KD+P++I RPSIV + P+
Sbjct: 182 LSWMDDETLTKITPKILGLRPNTYTLTKALAESTIETEAKDIPVIIIRPSIVGAMWQGPL 241
Query: 244 PGWVDNLNGPVGVMIGAGKGVIRTMLCDGTLSAQVIPVDXXXXXXXXXGMIEGTKKEKSL 303
PGW DN+NGP G+ G+GV+ M A +IPVD +
Sbjct: 242 PGWTDNINGPTGIFAAVGRGVLTNMCGSSESKADIIPVDIVANMIIASASYR--TSINTT 299
Query: 304 TIPVYNVNIGHQKPMTWGDVLTVAKDYGRKYPLSWPLWYPNGDITTNYTLHEIRRIFYHL 363
IPV + + G P+ WG ++ + + +KYP+ P+ + +L I H
Sbjct: 300 EIPVIHCSSGELNPLYWGHIVLFLEQFYKKYPMEQCFAVPSTYFHKSRSLFLINYYIKHH 359
Query: 364 VPAYCIDFLLFLMGQKR 380
+PA D L+G+++
Sbjct: 360 IPAAISDISARLIGKRK 376
>U40800-3|AAA81490.1| 467|Caenorhabditis elegans Squashed vulva
protein 1 protein.
Length = 467
Score = 31.9 bits (69), Expect = 0.91
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 14 RNILVTGGTGFMGKVLVEKLLYSVPEI 40
+ IL+TGG GF+G LV+KL+ E+
Sbjct: 137 KRILITGGAGFVGSHLVDKLMLDGHEV 163
>AY147933-1|AAN39843.1| 467|Caenorhabditis elegans UDP-glucuronic
acid decarboxylase protein.
Length = 467
Score = 31.9 bits (69), Expect = 0.91
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 14 RNILVTGGTGFMGKVLVEKLLYSVPEI 40
+ IL+TGG GF+G LV+KL+ E+
Sbjct: 137 KRILITGGAGFVGSHLVDKLMLDGHEV 163
>AL132949-28|CAB61106.1| 209|Caenorhabditis elegans Hypothetical
protein Y53F4B.32 protein.
Length = 209
Score = 31.9 bits (69), Expect = 0.91
Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 90 LFEDFGLSNLEIENLSKEVTVVF---HFAATLRLEAPLKDNVNMNTSGTLRTIKVAKKLK 146
L + G S++EI ++ EV + +F L K + T I V + L
Sbjct: 109 LAQKAGKSDVEIAKVASEVAIPARDSYFEIITNLLEKSKSGFLVGDGLTFADIVVVESLT 168
Query: 147 NLQIFVHLSTAFCYPDYEVLGEKLYAPPA 175
NL+ VH A +P L EK+YA PA
Sbjct: 169 NLEK-VHFFDASEHPKLAALREKIYAIPA 196
>U58761-4|AAB00715.1| 631|Caenorhabditis elegans Hypothetical
protein C01F1.3a protein.
Length = 631
Score = 31.1 bits (67), Expect = 1.6
Identities = 39/161 (24%), Positives = 67/161 (41%), Gaps = 28/161 (17%)
Query: 11 YAGRNILVTGGTGFMGKVLVEKLLYSVPEIG--NVYILMRPKKAKTVAQRLEDLQRLPL- 67
Y +N+++TGG GF+G V + + P N+ L+ + VA+ + + R L
Sbjct: 3 YTPKNVVITGGCGFIGSNFVNYIHDAWPTCNFVNIDKLILNSDTQNVAESVRNSPRYKLV 62
Query: 68 FDRLKNERPNALNKIKAIQGDVLFEDFGLSNLEIENLSKEVTVVFHFAA---TLRLEAPL 124
+KNE LN +FE E+ V HFAA + R
Sbjct: 63 LTDIKNEAA-ILN---------VFE------------QNEIDTVIHFAADCTSTRCYNET 100
Query: 125 KDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPDYEV 165
+ V N ++ ++ + ++ FVH+ST Y D ++
Sbjct: 101 AEAVQNNVLSFIQFLETVRTYGKIKRFVHISTDEVYGDSDL 141
>U23511-14|AAC46799.1| 357|Caenorhabditis elegans Hypothetical
protein C32D5.12 protein.
Length = 357
Score = 31.1 bits (67), Expect = 1.6
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 16 ILVTGGTGFMGKVLVEKLLYSVPEIGNVYILMRPKKAKTVAQRLEDLQRLPLFDRLKNER 75
+ VTGG G +G+ +V++LL + +I + I+ R ++ +++++ L ++ L DR E
Sbjct: 4 VAVTGGAGLVGRYVVQRLLEN-EQIAEIRIIDRQSTSRDESRKVK-LYQIDLNDRKSLE- 60
Query: 76 PNAL 79
NAL
Sbjct: 61 -NAL 63
>AF353303-1|AAK32717.1| 367|Caenorhabditis elegans GATA-like
transcription factorELT-6 protein.
Length = 367
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 119 RLEAPLKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPDYEVLGEKLYAPPAKPE 178
R P K++VN + K +N+ V S+ F PD++ ++ P A P+
Sbjct: 109 RKRKPTKESVNRHLENGGSDSPFEKITRNISTPVSASSPF--PDFQNFNGFVFDPMANPQ 166
Query: 179 HVMRLIEWLDDRQ 191
++M L+ + +Q
Sbjct: 167 NMMNLLNLVQQQQ 179
>AF100657-1|AAC68957.3| 367|Caenorhabditis elegans Erythroid-like
transcription factorfamily protein 6 protein.
Length = 367
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
Query: 119 RLEAPLKDNVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPDYEVLGEKLYAPPAKPE 178
R P K++VN + K +N+ V S+ F PD++ ++ P A P+
Sbjct: 109 RKRKPTKESVNRHLENGGSDSPFEKITRNISTPVSASSPF--PDFQNFNGFVFDPMANPQ 166
Query: 179 HVMRLIEWLDDRQ 191
++M L+ + +Q
Sbjct: 167 NMMNLLNLVQQQQ 179
>AL032633-1|CAA21594.1| 430|Caenorhabditis elegans Hypothetical
protein Y106G6A.1 protein.
Length = 430
Score = 29.5 bits (63), Expect = 4.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 186 WLDDRQLTLLTPSLLGPHPNCYTFSKRLAENVVEQAYKDLPIVIARP 232
W D + + P +L +P +T S+++ EN+++ A L V RP
Sbjct: 355 WSIDGEHPITVPRILDENPPNFTTSEKIDENLIKMAKLMLQSVAKRP 401
>AF099916-4|AAC68778.1| 189|Caenorhabditis elegans Hypothetical
protein F54C4.1 protein.
Length = 189
Score = 29.1 bits (62), Expect = 6.4
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 213 LAENVVEQAYKDLPIVIARPSIVCP--SYSEPMPGWVD 248
L E V+ A KDLP+++ PS+ P +Y P ++D
Sbjct: 145 LYEAAVQPAAKDLPLIVQGPSLTPPIRNYEAPDGDYID 182
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.323 0.140 0.432
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,698,008
Number of Sequences: 27539
Number of extensions: 465204
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1032
Number of HSP's gapped (non-prelim): 13
length of query: 432
length of database: 12,573,161
effective HSP length: 83
effective length of query: 349
effective length of database: 10,287,424
effective search space: 3590310976
effective search space used: 3590310976
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 61 (28.7 bits)
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